Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX3P41225 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX3P41225 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX3P41225 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SOX3P41225 AC233723.2-201ENST00000623798 2106 ntBASIC20.74■□□□□ 0.91
SOX3P41225 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX3P41225 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SOX3P41225 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX3P41225 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.74■□□□□ 0.91
SOX3P41225 DUX4L19-201ENST00000557448 1267 ntBASIC20.74■□□□□ 0.91
SOX3P41225 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SOX3P41225 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.74■□□□□ 0.91
SOX3P41225 SYT6-210ENST00000641643 1587 ntBASIC20.74■□□□□ 0.91
SOX3P41225 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SOX3P41225 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX3P41225 AC019069.1-201ENST00000610008 1333 ntBASIC20.74■□□□□ 0.91
SOX3P41225 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SOX3P41225 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.73■□□□□ 0.91
SOX3P41225 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX3P41225 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX3P41225 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX3P41225 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.73■□□□□ 0.91
SOX3P41225 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.73■□□□□ 0.91
SOX3P41225 AC106739.1-201ENST00000617035 715 ntBASIC20.73■□□□□ 0.91
SOX3P41225 AC241377.3-202ENST00000626088 1088 ntBASIC20.73■□□□□ 0.91
SOX3P41225 AC241585.3-202ENST00000628937 1088 ntBASIC20.73■□□□□ 0.91
SOX3P41225 AC245100.8-202ENST00000629247 1058 ntBASIC20.73■□□□□ 0.91
SOX3P41225 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.73■□□□□ 0.91
SOX3P41225 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX3P41225 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX3P41225 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX3P41225 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX3P41225 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SOX3P41225 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX3P41225 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.72■□□□□ 0.91
SOX3P41225 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX3P41225 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.72■□□□□ 0.91
SOX3P41225 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SOX3P41225 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SOX3P41225 AC024257.2-201ENST00000549699 147 ntBASIC20.72■□□□□ 0.91
SOX3P41225 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX3P41225 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SOX3P41225 LINC00565-201ENST00000562710 2331 ntBASIC20.72■□□□□ 0.91
SOX3P41225 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX3P41225 AC135279.3-201ENST00000610945 1311 ntBASIC20.72■□□□□ 0.91
SOX3P41225 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX3P41225 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX3P41225 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.72■□□□□ 0.91
SOX3P41225 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX3P41225 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SOX3P41225 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX3P41225 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX3P41225 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX3P41225 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.71■□□□□ 0.91
SOX3P41225 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX3P41225 AC006455.2-201ENST00000429931 906 ntBASIC20.71■□□□□ 0.91
SOX3P41225 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX3P41225 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.71■□□□□ 0.91
SOX3P41225 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SOX3P41225 AC009086.3-201ENST00000623486 1008 ntBASIC20.71■□□□□ 0.91
SOX3P41225 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SOX3P41225 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX3P41225 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SOX3P41225 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX3P41225 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX3P41225 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
SOX3P41225 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
SOX3P41225 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.7■□□□□ 0.9
SOX3P41225 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SOX3P41225 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SOX3P41225 SERBP1P1-201ENST00000396021 1160 ntBASIC20.7■□□□□ 0.9
SOX3P41225 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.7■□□□□ 0.9
SOX3P41225 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.7■□□□□ 0.9
SOX3P41225 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.7■□□□□ 0.9
SOX3P41225 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.7■□□□□ 0.9
SOX3P41225 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX3P41225 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX3P41225 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SOX3P41225 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SOX3P41225 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX3P41225 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX3P41225 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX3P41225 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SOX3P41225 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SOX3P41225 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SOX3P41225 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SOX3P41225 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.69■□□□□ 0.9
SOX3P41225 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.69■□□□□ 0.9
SOX3P41225 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SOX3P41225 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SOX3P41225 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.69■□□□□ 0.9
SOX3P41225 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SOX3P41225 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SOX3P41225 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX3P41225 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.68■□□□□ 0.9
SOX3P41225 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX3P41225 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.68■□□□□ 0.9
SOX3P41225 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SOX3P41225 AC133561.4-201ENST00000566112 224 ntBASIC20.68■□□□□ 0.9
SOX3P41225 AC005837.3-201ENST00000612163 286 ntBASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms