Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX1P28360 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.26■□□□□ 0.83
MSX1P28360 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX1P28360 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.26■□□□□ 0.83
MSX1P28360 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX1P28360 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX1P28360 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
MSX1P28360 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSX1P28360 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX1P28360 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
MSX1P28360 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
MSX1P28360 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX1P28360 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX1P28360 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.25■□□□□ 0.83
MSX1P28360 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.25■□□□□ 0.83
MSX1P28360 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX1P28360 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.25■□□□□ 0.83
MSX1P28360 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.24■□□□□ 0.83
MSX1P28360 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.24■□□□□ 0.83
MSX1P28360 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSX1P28360 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSX1P28360 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MSX1P28360 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.24■□□□□ 0.83
MSX1P28360 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSX1P28360 AP001330.3-201ENST00000520123 633 ntBASIC20.24■□□□□ 0.83
MSX1P28360 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSX1P28360 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
MSX1P28360 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSX1P28360 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.24■□□□□ 0.83
MSX1P28360 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.24■□□□□ 0.83
MSX1P28360 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX1P28360 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX1P28360 AC006455.2-201ENST00000429931 906 ntBASIC20.23■□□□□ 0.83
MSX1P28360 AC091305.1-201ENST00000479476 895 ntBASIC20.23■□□□□ 0.83
MSX1P28360 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.23■□□□□ 0.83
MSX1P28360 pRNA.6-201ENST00000610482 90 ntBASIC20.23■□□□□ 0.83
MSX1P28360 pRNA.5-201ENST00000612139 90 ntBASIC20.23■□□□□ 0.83
MSX1P28360 pRNA.11-201ENST00000618423 90 ntBASIC20.23■□□□□ 0.83
MSX1P28360 pRNA.13-201ENST00000619112 90 ntBASIC20.23■□□□□ 0.83
MSX1P28360 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
MSX1P28360 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MSX1P28360 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MSX1P28360 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX1P28360 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX1P28360 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
MSX1P28360 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.23■□□□□ 0.83
MSX1P28360 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX1P28360 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
MSX1P28360 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.22■□□□□ 0.83
MSX1P28360 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 MIR3181-201ENST00000578512 73 ntBASIC20.22■□□□□ 0.83
MSX1P28360 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.22■□□□□ 0.83
MSX1P28360 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX1P28360 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.22■□□□□ 0.83
MSX1P28360 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX1P28360 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSX1P28360 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX1P28360 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.21■□□□□ 0.83
MSX1P28360 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX1P28360 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX1P28360 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.21■□□□□ 0.83
MSX1P28360 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.21■□□□□ 0.83
MSX1P28360 AC011298.3-201ENST00000615796 283 ntBASIC20.21■□□□□ 0.83
MSX1P28360 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX1P28360 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSX1P28360 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
MSX1P28360 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSX1P28360 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.2■□□□□ 0.82
MSX1P28360 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.2■□□□□ 0.82
MSX1P28360 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.2■□□□□ 0.82
MSX1P28360 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.2■□□□□ 0.82
MSX1P28360 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.2■□□□□ 0.82
MSX1P28360 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.2■□□□□ 0.82
MSX1P28360 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
MSX1P28360 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
MSX1P28360 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.2■□□□□ 0.82
MSX1P28360 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.19■□□□□ 0.82
MSX1P28360 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX1P28360 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.19■□□□□ 0.82
MSX1P28360 SERBP1P1-201ENST00000396021 1160 ntBASIC20.19■□□□□ 0.82
MSX1P28360 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MSX1P28360 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.19■□□□□ 0.82
MSX1P28360 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.19■□□□□ 0.82
MSX1P28360 MIR4767-201ENST00000582827 78 ntBASIC20.19■□□□□ 0.82
MSX1P28360 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
MSX1P28360 MIR6821-201ENST00000617625 74 ntBASIC20.19■□□□□ 0.82
MSX1P28360 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX1P28360 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.19■□□□□ 0.82
MSX1P28360 AC133637.1-201ENST00000624115 1537 ntBASIC20.18■□□□□ 0.82
MSX1P28360 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSX1P28360 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSX1P28360 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms