Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.27■■□□□ 1.31
VCANP13611 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.26■■□□□ 1.31
VCANP13611 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
VCANP13611 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VCANP13611 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VCANP13611 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.26■■□□□ 1.31
VCANP13611 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
VCANP13611 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
VCANP13611 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
VCANP13611 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC23.25■■□□□ 1.31
VCANP13611 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.25■■□□□ 1.31
VCANP13611 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.25■■□□□ 1.31
VCANP13611 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.25■■□□□ 1.31
VCANP13611 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.25■■□□□ 1.31
VCANP13611 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
VCANP13611 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.25■■□□□ 1.31
VCANP13611 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC23.25■■□□□ 1.31
VCANP13611 CNN2P6-201ENST00000439038 900 ntBASIC23.25■■□□□ 1.31
VCANP13611 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.25■■□□□ 1.31
VCANP13611 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
VCANP13611 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.24■■□□□ 1.31
VCANP13611 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
VCANP13611 AC231657.2-201ENST00000624556 255 ntBASIC23.24■■□□□ 1.31
VCANP13611 ERN1-208ENST00000606895 2068 ntBASIC23.24■■□□□ 1.31
VCANP13611 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VCANP13611 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
VCANP13611 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
VCANP13611 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC23.24■■□□□ 1.31
VCANP13611 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VCANP13611 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VCANP13611 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
VCANP13611 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
VCANP13611 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
VCANP13611 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.23■■□□□ 1.31
VCANP13611 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC23.23■■□□□ 1.31
VCANP13611 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
VCANP13611 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
VCANP13611 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.23■■□□□ 1.31
VCANP13611 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.23■■□□□ 1.31
VCANP13611 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VCANP13611 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC23.23■■□□□ 1.31
VCANP13611 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.23■■□□□ 1.31
VCANP13611 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.23■■□□□ 1.31
VCANP13611 AC105233.4-201ENST00000642045 216 ntBASIC23.23■■□□□ 1.31
VCANP13611 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
VCANP13611 AF201337.1-201ENST00000520239 748 ntBASIC23.22■■□□□ 1.31
VCANP13611 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.22■■□□□ 1.31
VCANP13611 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
VCANP13611 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.22■■□□□ 1.31
VCANP13611 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
VCANP13611 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
VCANP13611 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
VCANP13611 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.21■■□□□ 1.31
VCANP13611 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
VCANP13611 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VCANP13611 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VCANP13611 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VCANP13611 KRT18P21-201ENST00000515767 1272 ntBASIC23.21■■□□□ 1.31
VCANP13611 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VCANP13611 MIR4497-201ENST00000583208 89 ntBASIC23.21■■□□□ 1.31
VCANP13611 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VCANP13611 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VCANP13611 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VCANP13611 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VCANP13611 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.21■■□□□ 1.31
VCANP13611 UBE2DNL-204ENST00000602536 740 ntBASIC23.21■■□□□ 1.31
VCANP13611 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.21■■□□□ 1.31
VCANP13611 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VCANP13611 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.21■■□□□ 1.31
VCANP13611 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.31
VCANP13611 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.2■■□□□ 1.31
VCANP13611 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
VCANP13611 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
VCANP13611 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.2■■□□□ 1.3
VCANP13611 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
VCANP13611 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
VCANP13611 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VCANP13611 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
VCANP13611 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
VCANP13611 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.2■■□□□ 1.3
VCANP13611 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.2■■□□□ 1.3
VCANP13611 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.2■■□□□ 1.3
VCANP13611 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VCANP13611 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VCANP13611 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.19■■□□□ 1.3
VCANP13611 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VCANP13611 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VCANP13611 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VCANP13611 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
VCANP13611 RARRES2P4-201ENST00000514074 484 ntBASIC23.19■■□□□ 1.3
VCANP13611 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC23.19■■□□□ 1.3
VCANP13611 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.19■■□□□ 1.3
VCANP13611 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VCANP13611 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.19■■□□□ 1.3
VCANP13611 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
VCANP13611 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.19■■□□□ 1.3
VCANP13611 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VCANP13611 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC23.18■■□□□ 1.3
VCANP13611 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC23.18■■□□□ 1.3
VCANP13611 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms