Protein–RNA interactions for Protein: P07384

CAPN1, Calpain-1 catalytic subunit, humanhuman

Predictions only

Length 714 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1P07384 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CAPN1P07384 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.73■■□□□ 1.07
CAPN1P07384 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.73■■□□□ 1.07
CAPN1P07384 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CAPN1P07384 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CAPN1P07384 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CAPN1P07384 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CAPN1P07384 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CAPN1P07384 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CAPN1P07384 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CAPN1P07384 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.72■■□□□ 1.07
CAPN1P07384 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.72■■□□□ 1.07
CAPN1P07384 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CAPN1P07384 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.71■■□□□ 1.07
CAPN1P07384 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CAPN1P07384 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.71■■□□□ 1.07
CAPN1P07384 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CAPN1P07384 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CAPN1P07384 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CAPN1P07384 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CAPN1P07384 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CAPN1P07384 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.7■■□□□ 1.06
CAPN1P07384 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
CAPN1P07384 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.7■■□□□ 1.06
CAPN1P07384 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CAPN1P07384 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.7■■□□□ 1.06
CAPN1P07384 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CAPN1P07384 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CAPN1P07384 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CAPN1P07384 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CAPN1P07384 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.69■■□□□ 1.06
CAPN1P07384 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CAPN1P07384 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CAPN1P07384 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CAPN1P07384 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CAPN1P07384 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.69■■□□□ 1.06
CAPN1P07384 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CAPN1P07384 AL353803.4-201ENST00000565882 1934 ntBASIC21.68■■□□□ 1.06
CAPN1P07384 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CAPN1P07384 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CAPN1P07384 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.67■■□□□ 1.06
CAPN1P07384 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CAPN1P07384 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CAPN1P07384 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CAPN1P07384 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.67■■□□□ 1.06
CAPN1P07384 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CAPN1P07384 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CAPN1P07384 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CAPN1P07384 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.66■■□□□ 1.06
CAPN1P07384 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CAPN1P07384 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CAPN1P07384 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.66■■□□□ 1.06
CAPN1P07384 AC133561.4-201ENST00000566112 224 ntBASIC21.66■■□□□ 1.06
CAPN1P07384 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CAPN1P07384 AC005837.3-201ENST00000612163 286 ntBASIC21.66■■□□□ 1.06
CAPN1P07384 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
CAPN1P07384 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CAPN1P07384 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CAPN1P07384 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CAPN1P07384 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CAPN1P07384 AC005703.6-201ENST00000623265 1329 ntBASIC21.65■■□□□ 1.06
CAPN1P07384 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.65■■□□□ 1.06
CAPN1P07384 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CAPN1P07384 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.65■■□□□ 1.06
CAPN1P07384 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CAPN1P07384 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.65■■□□□ 1.06
CAPN1P07384 EP400NL-214ENST00000641289 2402 ntBASIC21.64■■□□□ 1.05
CAPN1P07384 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CAPN1P07384 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CAPN1P07384 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CAPN1P07384 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CAPN1P07384 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.64■■□□□ 1.05
CAPN1P07384 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.64■■□□□ 1.05
CAPN1P07384 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.64■■□□□ 1.05
CAPN1P07384 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.64■■□□□ 1.05
CAPN1P07384 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CAPN1P07384 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CAPN1P07384 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.64■■□□□ 1.05
CAPN1P07384 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CAPN1P07384 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.63■■□□□ 1.05
CAPN1P07384 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CAPN1P07384 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms