Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.51■□□□□ 0.87
NKX2-2O95096 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
NKX2-2O95096 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 ESRRAP2-201ENST00000418437 1549 ntBASIC20.5■□□□□ 0.87
NKX2-2O95096 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.5■□□□□ 0.87
NKX2-2O95096 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-2O95096 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.49■□□□□ 0.87
NKX2-2O95096 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-2O95096 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.49■□□□□ 0.87
NKX2-2O95096 AC092171.4-201ENST00000609130 632 ntBASIC20.49■□□□□ 0.87
NKX2-2O95096 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.49■□□□□ 0.87
NKX2-2O95096 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
NKX2-2O95096 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-2O95096 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.49■□□□□ 0.87
NKX2-2O95096 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
NKX2-2O95096 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-2O95096 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
NKX2-2O95096 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-2O95096 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-2O95096 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.48■□□□□ 0.87
NKX2-2O95096 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-2O95096 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
NKX2-2O95096 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-2O95096 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.48■□□□□ 0.87
NKX2-2O95096 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.48■□□□□ 0.87
NKX2-2O95096 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
NKX2-2O95096 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-2O95096 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-2O95096 AC004687.1-201ENST00000579003 1625 ntBASIC20.48■□□□□ 0.87
NKX2-2O95096 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-2O95096 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
NKX2-2O95096 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-2O95096 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.47■□□□□ 0.87
NKX2-2O95096 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-2O95096 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-2O95096 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-2O95096 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.47■□□□□ 0.87
NKX2-2O95096 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.47■□□□□ 0.87
NKX2-2O95096 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
NKX2-2O95096 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.47■□□□□ 0.87
NKX2-2O95096 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.47■□□□□ 0.87
NKX2-2O95096 pRNA.6-201ENST00000610482 90 ntBASIC20.47■□□□□ 0.87
NKX2-2O95096 pRNA.5-201ENST00000612139 90 ntBASIC20.47■□□□□ 0.87
NKX2-2O95096 pRNA.11-201ENST00000618423 90 ntBASIC20.47■□□□□ 0.87
NKX2-2O95096 pRNA.13-201ENST00000619112 90 ntBASIC20.47■□□□□ 0.87
NKX2-2O95096 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-2O95096 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-2O95096 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-2O95096 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
NKX2-2O95096 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.47■□□□□ 0.87
NKX2-2O95096 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-2O95096 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-2O95096 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
NKX2-2O95096 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-2O95096 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.46■□□□□ 0.87
NKX2-2O95096 AC233723.2-201ENST00000623798 2106 ntBASIC20.46■□□□□ 0.87
NKX2-2O95096 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-2O95096 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
NKX2-2O95096 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.46■□□□□ 0.87
NKX2-2O95096 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-2O95096 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.45■□□□□ 0.86
NKX2-2O95096 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-2O95096 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-2O95096 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-2O95096 AC131212.1-201ENST00000613771 668 ntBASIC20.45■□□□□ 0.86
NKX2-2O95096 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-2O95096 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
NKX2-2O95096 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.45■□□□□ 0.86
NKX2-2O95096 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
NKX2-2O95096 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-2O95096 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-2O95096 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
NKX2-2O95096 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX2-2O95096 AC133637.1-201ENST00000624115 1537 ntBASIC20.44■□□□□ 0.86
NKX2-2O95096 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX2-2O95096 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX2-2O95096 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX2-2O95096 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.44■□□□□ 0.86
NKX2-2O95096 MIR3181-201ENST00000578512 73 ntBASIC20.44■□□□□ 0.86
NKX2-2O95096 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NKX2-2O95096 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.44■□□□□ 0.86
NKX2-2O95096 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
NKX2-2O95096 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.43■□□□□ 0.86
NKX2-2O95096 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX2-2O95096 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX2-2O95096 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX2-2O95096 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX2-2O95096 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX2-2O95096 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms