Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.31■■□□□ 1
SLC28A1O00337 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.31■■□□□ 1
SLC28A1O00337 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SLC28A1O00337 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.31■■□□□ 1
SLC28A1O00337 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.31■■□□□ 1
SLC28A1O00337 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.31■■□□□ 1
SLC28A1O00337 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SLC28A1O00337 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SLC28A1O00337 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SLC28A1O00337 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.3■■□□□ 1
SLC28A1O00337 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.3■■□□□ 1
SLC28A1O00337 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
SLC28A1O00337 DUX4L4-201ENST00000566884 1269 ntBASIC21.3■■□□□ 1
SLC28A1O00337 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
SLC28A1O00337 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SLC28A1O00337 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.3■■□□□ 1
SLC28A1O00337 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.3■■□□□ 1
SLC28A1O00337 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SLC28A1O00337 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SLC28A1O00337 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.29■■□□□ 1
SLC28A1O00337 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SLC28A1O00337 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC28A1O00337 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SLC28A1O00337 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SLC28A1O00337 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SLC28A1O00337 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.29■■□□□ 1
SLC28A1O00337 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC28A1O00337 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
SLC28A1O00337 AC087742.1-201ENST00000575880 1738 ntBASIC21.29■■□□□ 1
SLC28A1O00337 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC28A1O00337 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SLC28A1O00337 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SLC28A1O00337 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
SLC28A1O00337 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.28■■□□□ 1
SLC28A1O00337 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.28■■□□□ 1
SLC28A1O00337 AC009086.3-201ENST00000623486 1008 ntBASIC21.28■■□□□ 1
SLC28A1O00337 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.28■■□□□ 1
SLC28A1O00337 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SLC28A1O00337 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
SLC28A1O00337 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SLC28A1O00337 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.28■■□□□ 1
SLC28A1O00337 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SLC28A1O00337 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SLC28A1O00337 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.28■■□□□ 1
SLC28A1O00337 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SLC28A1O00337 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SLC28A1O00337 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SLC28A1O00337 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SLC28A1O00337 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SLC28A1O00337 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SLC28A1O00337 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SLC28A1O00337 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
SLC28A1O00337 MTDHP2-201ENST00000601468 714 ntBASIC21.27■■□□□ 1
SLC28A1O00337 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.27■■□□□ 1
SLC28A1O00337 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.27■■□□□ 1
SLC28A1O00337 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.27■□□□□ 0.99
SLC28A1O00337 AC092053.2-201ENST00000640557 1818 ntBASIC21.27■□□□□ 0.99
SLC28A1O00337 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC28A1O00337 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.27■□□□□ 0.99
SLC28A1O00337 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC28A1O00337 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC28A1O00337 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.26■□□□□ 0.99
SLC28A1O00337 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC28A1O00337 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC28A1O00337 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC28A1O00337 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC28A1O00337 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SLC28A1O00337 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SLC28A1O00337 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.26■□□□□ 0.99
SLC28A1O00337 MIR4787-201ENST00000607364 84 ntBASIC21.26■□□□□ 0.99
SLC28A1O00337 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
SLC28A1O00337 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC28A1O00337 AC139530.1-201ENST00000575312 1977 ntBASIC21.26■□□□□ 0.99
SLC28A1O00337 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC28A1O00337 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.26■□□□□ 0.99
SLC28A1O00337 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.25■□□□□ 0.99
SLC28A1O00337 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
SLC28A1O00337 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.25■□□□□ 0.99
SLC28A1O00337 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC28A1O00337 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.25■□□□□ 0.99
SLC28A1O00337 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SLC28A1O00337 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms