Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 AP005435.1-201ENST00000529293 1178 ntBASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
SMIM28A0A1B0GU29 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SMIM28A0A1B0GU29 AC092068.2-201ENST00000590491 1708 ntBASIC23.87■■□□□ 1.41
SMIM28A0A1B0GU29 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.87■■□□□ 1.41
SMIM28A0A1B0GU29 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC23.87■■□□□ 1.41
SMIM28A0A1B0GU29 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
SMIM28A0A1B0GU29 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.86■■□□□ 1.41
SMIM28A0A1B0GU29 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SMIM28A0A1B0GU29 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
SMIM28A0A1B0GU29 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
SMIM28A0A1B0GU29 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SMIM28A0A1B0GU29 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SMIM28A0A1B0GU29 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
SMIM28A0A1B0GU29 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SMIM28A0A1B0GU29 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SMIM28A0A1B0GU29 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.85■■□□□ 1.41
SMIM28A0A1B0GU29 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.85■■□□□ 1.41
SMIM28A0A1B0GU29 MIR6821-201ENST00000617625 74 ntBASIC23.85■■□□□ 1.41
SMIM28A0A1B0GU29 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.85■■□□□ 1.41
SMIM28A0A1B0GU29 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SMIM28A0A1B0GU29 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SMIM28A0A1B0GU29 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SMIM28A0A1B0GU29 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 MIR572-201ENST00000384983 95 ntBASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 AC097381.1-201ENST00000429019 1296 ntBASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
SMIM28A0A1B0GU29 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.83■■□□□ 1.41
SMIM28A0A1B0GU29 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMIM28A0A1B0GU29 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMIM28A0A1B0GU29 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.83■■□□□ 1.41
SMIM28A0A1B0GU29 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.83■■□□□ 1.41
SMIM28A0A1B0GU29 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMIM28A0A1B0GU29 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.83■■□□□ 1.41
SMIM28A0A1B0GU29 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.83■■□□□ 1.4
SMIM28A0A1B0GU29 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SMIM28A0A1B0GU29 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.81■■□□□ 1.4
SMIM28A0A1B0GU29 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 SP2-202ENST00000613139 908 ntTSL 5 BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms