Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 U73169.1-201ENST00000395152 367 ntBASIC12.99□□□□□ -0.33
COL28A1Q2UY09 HNRNPABP1-201ENST00000406003 734 ntBASIC12.99□□□□□ -0.33
COL28A1Q2UY09 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 ZNF877P-201ENST00000437614 612 ntBASIC12.99□□□□□ -0.33
COL28A1Q2UY09 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 AC069421.1-201ENST00000447462 323 ntBASIC12.99□□□□□ -0.33
COL28A1Q2UY09 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 GYG1-209ENST00000483267 801 ntTSL 2 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 KRT8P34-201ENST00000577607 1044 ntBASIC12.99□□□□□ -0.33
COL28A1Q2UY09 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 MIR5193-201ENST00000584510 109 ntBASIC12.99□□□□□ -0.33
COL28A1Q2UY09 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL28A1Q2UY09 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 MIR632-201ENST00000385193 94 ntBASIC12.98□□□□□ -0.33
COL28A1Q2UY09 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 TPT1P9-201ENST00000413759 514 ntBASIC12.98□□□□□ -0.33
COL28A1Q2UY09 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 AC103563.1-201ENST00000429316 123 ntBASIC12.98□□□□□ -0.33
COL28A1Q2UY09 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 OR2A1-AS1-203ENST00000468575 568 ntBASIC12.98□□□□□ -0.33
COL28A1Q2UY09 AC022121.1-201ENST00000484584 579 ntBASIC12.98□□□□□ -0.33
COL28A1Q2UY09 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 BOLA3P2-201ENST00000586496 323 ntBASIC12.98□□□□□ -0.33
COL28A1Q2UY09 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 MIEF1-215ENST00000637854 213 ntBASIC12.98□□□□□ -0.33
COL28A1Q2UY09 OS9-218ENST00000551035 2246 ntTSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms