Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SMARCA1P28370 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SMARCA1P28370 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC15.27■□□□□ 0.03
SMARCA1P28370 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SMARCA1P28370 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SMARCA1P28370 CSTF2-201ENST00000372972 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SMARCA1P28370 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SMARCA1P28370 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SMARCA1P28370 AC018445.4-201ENST00000624066 2291 ntBASIC15.27■□□□□ 0.03
SMARCA1P28370 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SMARCA1P28370 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC15.27■□□□□ 0.03
SMARCA1P28370 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15.26■□□□□ 0.03
SMARCA1P28370 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.26■□□□□ 0.03
SMARCA1P28370 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 AL591368.1-201ENST00000437181 1449 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.26■□□□□ 0.03
SMARCA1P28370 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 ATF4P4-201ENST00000393544 1930 ntBASIC15.26■□□□□ 0.03
SMARCA1P28370 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 RPL18AP16-201ENST00000424057 531 ntBASIC15.26■□□□□ 0.03
SMARCA1P28370 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC15.26■□□□□ 0.03
SMARCA1P28370 AC083801.1-201ENST00000491689 358 ntBASIC15.26■□□□□ 0.03
SMARCA1P28370 HNRNPA1P4-201ENST00000509706 756 ntBASIC15.26■□□□□ 0.03
SMARCA1P28370 GDNF-207ENST00000515058 764 ntTSL 5 BASIC15.26■□□□□ 0.03
SMARCA1P28370 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC15.26■□□□□ 0.03
SMARCA1P28370 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC15.26■□□□□ 0.03
SMARCA1P28370 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 CLPP-205ENST00000596605 646 ntTSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
SMARCA1P28370 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC15.26■□□□□ 0.03
SMARCA1P28370 NUDT9-203ENST00000473942 2458 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SMARCA1P28370 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 GSDMB-201ENST00000309481 1500 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 ARHGEF9-220ENST00000635729 1761 ntTSL 5 BASIC15.26■□□□□ 0.03
SMARCA1P28370 DKFZP434A062-201ENST00000573103 5021 ntBASIC15.26■□□□□ 0.03
SMARCA1P28370 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 A1BG-AS1-203ENST00000594950 1718 ntTSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
SMARCA1P28370 ITGAL-203ENST00000433423 1416 ntTSL 2 BASIC15.26■□□□□ 0.03
SMARCA1P28370 AP003969.2-201ENST00000623739 2275 ntBASIC15.26■□□□□ 0.03
SMARCA1P28370 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC15.25■□□□□ 0.03
SMARCA1P28370 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
SMARCA1P28370 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SMARCA1P28370 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 ZFP37-203ENST00000555206 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SMARCA1P28370 MIR497HG-202ENST00000572453 3838 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC15.25■□□□□ 0.03
SMARCA1P28370 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
SMARCA1P28370 PABPC1P2-201ENST00000471997 1805 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 PTGER4P2-201ENST00000328411 252 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC15.25■□□□□ 0.03
SMARCA1P28370 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC15.25■□□□□ 0.03
SMARCA1P28370 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC15.25■□□□□ 0.03
SMARCA1P28370 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 AC027612.2-202ENST00000445955 1199 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 DUX4L31-201ENST00000446466 1136 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 PTGER4P3-201ENST00000458150 252 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SMARCA1P28370 AC023051.2-201ENST00000541141 460 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 AC010202.1-201ENST00000551181 405 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 AL022344.2-201ENST00000568976 968 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC15.25■□□□□ 0.03
SMARCA1P28370 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SMARCA1P28370 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SMARCA1P28370 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC15.25■□□□□ 0.03
SMARCA1P28370 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
SMARCA1P28370 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC15.25■□□□□ 0.03
SMARCA1P28370 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 RORC-201ENST00000318247 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 ARL8B-202ENST00000419534 1684 ntTSL 2 BASIC15.25■□□□□ 0.03
SMARCA1P28370 SUPT20HL1-201ENST00000436466 2618 ntBASIC15.25■□□□□ 0.03
SMARCA1P28370 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SMARCA1P28370 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SMARCA1P28370 KRT15-202ENST00000393974 3758 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SMARCA1P28370 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SMARCA1P28370 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms