Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MIR6842-201ENST00000612539 65 ntBASIC15.85■□□□□ 0.13
HMGB1P09429 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 AC002044.2-201ENST00000624910 970 ntBASIC15.85■□□□□ 0.13
HMGB1P09429 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 C20orf96-203ENST00000400269 1608 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 FPGT-202ENST00000370898 3254 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 AC006480.2-201ENST00000609770 1337 ntBASIC15.85■□□□□ 0.13
HMGB1P09429 STRCP1-201ENST00000509801 5328 ntBASIC15.85■□□□□ 0.13
HMGB1P09429 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGB1P09429 TTN-AS1-209ENST00000456053 2033 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGB1P09429 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGB1P09429 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGB1P09429 AC091181.1-201ENST00000623762 2098 ntBASIC15.85■□□□□ 0.13
HMGB1P09429 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGB1P09429 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC15.85■□□□□ 0.13
HMGB1P09429 KRT8P25-201ENST00000473150 1456 ntBASIC15.84■□□□□ 0.13
HMGB1P09429 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB1P09429 ATP6V1B1-201ENST00000234396 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
HMGB1P09429 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
HMGB1P09429 FBXO5-201ENST00000229758 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 GDPD5-204ENST00000526177 4150 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 ARL8B-202ENST00000419534 1684 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB1P09429 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGB1P09429 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC15.84■□□□□ 0.13
HMGB1P09429 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB1P09429 AC079112.1-201ENST00000454972 939 ntBASIC15.84■□□□□ 0.13
HMGB1P09429 RN7SL181P-201ENST00000462921 277 ntBASIC15.84■□□□□ 0.13
HMGB1P09429 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC15.84■□□□□ 0.13
HMGB1P09429 SRP19-206ENST00000515463 660 ntTSL 3 BASIC15.84■□□□□ 0.13
HMGB1P09429 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.84■□□□□ 0.13
HMGB1P09429 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC15.84■□□□□ 0.13
HMGB1P09429 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGB1P09429 AC073911.3-201ENST00000624401 631 ntBASIC15.84■□□□□ 0.13
HMGB1P09429 AL139823.1-201ENST00000641871 1225 ntBASIC15.84■□□□□ 0.13
HMGB1P09429 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB1P09429 MRPL44-201ENST00000258383 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC15.84■□□□□ 0.13
HMGB1P09429 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGB1P09429 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HMGB1P09429 ZDHHC8P1-202ENST00000418264 1403 ntBASIC15.84■□□□□ 0.13
HMGB1P09429 VOPP1-217ENST00000625836 1400 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB1P09429 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB1P09429 ZFP69B-201ENST00000361584 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB1P09429 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB1P09429 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB1P09429 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC15.83■□□□□ 0.13
HMGB1P09429 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB1P09429 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC15.83■□□□□ 0.13
HMGB1P09429 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
HMGB1P09429 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.13
HMGB1P09429 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC15.83■□□□□ 0.13
HMGB1P09429 DDX11L1-202ENST00000456328 1657 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB1P09429 DDX11L10-202ENST00000513886 1652 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB1P09429 DDX11L9-203ENST00000562189 1652 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB1P09429 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HMGB1P09429 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HMGB1P09429 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 AC003958.1-201ENST00000435883 421 ntBASIC15.83■□□□□ 0.12
HMGB1P09429 AC098935.1-201ENST00000446057 611 ntBASIC15.83■□□□□ 0.12
HMGB1P09429 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC15.83■□□□□ 0.12
HMGB1P09429 BAK1P2-201ENST00000532665 631 ntBASIC15.83■□□□□ 0.12
HMGB1P09429 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC15.83■□□□□ 0.12
HMGB1P09429 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB1P09429 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB1P09429 AC087045.2-201ENST00000606279 1003 ntBASIC15.83■□□□□ 0.12
HMGB1P09429 AC073352.2-201ENST00000609385 439 ntBASIC15.83■□□□□ 0.12
HMGB1P09429 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB1P09429 FANCC-210ENST00000490972 2709 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 TUBB8P5-201ENST00000445286 1351 ntBASIC15.83■□□□□ 0.12
HMGB1P09429 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HMGB1P09429 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
HMGB1P09429 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HMGB1P09429 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 SARS2-205ENST00000594171 1631 ntTSL 2 BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms