Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SMARCA1P28370 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 ZFP69B-201ENST00000361584 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 MT1F-201ENST00000334350 690 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 MIR324-201ENST00000362183 83 ntBASIC15.36■□□□□ 0.05
SMARCA1P28370 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC15.36■□□□□ 0.05
SMARCA1P28370 AL136084.1-201ENST00000449172 318 ntBASIC15.36■□□□□ 0.05
SMARCA1P28370 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC15.36■□□□□ 0.05
SMARCA1P28370 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC15.36■□□□□ 0.05
SMARCA1P28370 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 FRG2EP-201ENST00000634243 835 ntBASIC15.36■□□□□ 0.05
SMARCA1P28370 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC15.36■□□□□ 0.05
SMARCA1P28370 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC15.36■□□□□ 0.05
SMARCA1P28370 SERPING1-203ENST00000378323 1733 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC15.36■□□□□ 0.05
SMARCA1P28370 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.36■□□□□ 0.05
SMARCA1P28370 TTC26-207ENST00000478836 1794 ntTSL 2 BASIC15.36■□□□□ 0.05
SMARCA1P28370 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SMARCA1P28370 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
SMARCA1P28370 POM121L14P-201ENST00000406100 1558 ntBASIC15.36■□□□□ 0.05
SMARCA1P28370 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
SMARCA1P28370 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC15.36■□□□□ 0.05
SMARCA1P28370 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC15.36■□□□□ 0.05
SMARCA1P28370 AC006144.1-201ENST00000424220 1600 ntBASIC15.35■□□□□ 0.05
SMARCA1P28370 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC15.35■□□□□ 0.05
SMARCA1P28370 SARS2-205ENST00000594171 1631 ntTSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
SMARCA1P28370 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC15.35■□□□□ 0.05
SMARCA1P28370 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC15.35■□□□□ 0.05
SMARCA1P28370 AL355334.1-201ENST00000417713 215 ntBASIC15.35■□□□□ 0.05
SMARCA1P28370 HNRNPA1P21-201ENST00000424115 961 ntBASIC15.35■□□□□ 0.05
SMARCA1P28370 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC15.35■□□□□ 0.05
SMARCA1P28370 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 AC025594.1-201ENST00000469533 543 ntBASIC15.35■□□□□ 0.05
SMARCA1P28370 RN7SL288P-201ENST00000490496 291 ntBASIC15.35■□□□□ 0.05
SMARCA1P28370 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC15.35■□□□□ 0.05
SMARCA1P28370 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC15.35■□□□□ 0.05
SMARCA1P28370 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC15.35■□□□□ 0.05
SMARCA1P28370 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 AC006262.2-202ENST00000600152 333 ntTSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 AC244154.1-201ENST00000620148 1555 ntBASIC15.35■□□□□ 0.05
SMARCA1P28370 CICP17-201ENST00000418553 2377 ntBASIC15.35■□□□□ 0.05
SMARCA1P28370 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC15.35■□□□□ 0.05
SMARCA1P28370 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 USP36-202ENST00000449938 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 AGGF1P10-201ENST00000635005 2191 ntBASIC15.35■□□□□ 0.05
SMARCA1P28370 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC15.35■□□□□ 0.05
SMARCA1P28370 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SMARCA1P28370 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SMARCA1P28370 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC15.34■□□□□ 0.05
SMARCA1P28370 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
SMARCA1P28370 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC15.34■□□□□ 0.05
SMARCA1P28370 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC005562.1-201ENST00000583030 3219 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC15.34■□□□□ 0.05
SMARCA1P28370 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms