Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL355922.2-201ENST00000557335 1398 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 AC244154.1-201ENST00000620148 1555 ntBASIC13.37□□□□□ -0.27
COL6A3P12111 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL6A3P12111 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 AC007389.1-202ENST00000377977 1266 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 LRTOMT-205ENST00000423494 1270 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 UBQLN4P2-201ENST00000446233 948 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 VDAC1P13-201ENST00000447826 859 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 GUSBP1-201ENST00000449061 758 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 AC005220.1-201ENST00000450473 884 ntTSL 5 BASIC13.36□□□□□ -0.27
COL6A3P12111 AC019254.2-201ENST00000560938 556 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 LINC00680-206ENST00000635948 181 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 RCC2P1-201ENST00000452257 1476 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 LINC00511-202ENST00000457958 1696 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
COL6A3P12111 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.36□□□□□ -0.27
COL6A3P12111 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 BTNL8-202ENST00000340184 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 LILRA2-204ENST00000391738 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 CNN2P4-201ENST00000396461 904 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 CEACAM22P-202ENST00000455058 1021 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 MT1HL1-201ENST00000464121 316 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
COL6A3P12111 RPL7AP53-201ENST00000468834 793 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 FAXDC2-205ENST00000517938 1203 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 TP53TG3B-201ENST00000341305 2034 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
COL6A3P12111 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 SULT1A4-201ENST00000360423 1390 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 TIRAP-201ENST00000392678 1264 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 AC074397.1-201ENST00000418013 1010 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 HLA-U-204ENST00000418981 186 ntBASIC13.36□□□□□ -0.27
COL6A3P12111 LRTOMT-208ENST00000439209 801 ntTSL 3 BASIC13.36□□□□□ -0.27
COL6A3P12111 FAM236A-202ENST00000611003 403 ntAPPRIS P5 TSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 CRYZL1-204ENST00000381554 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 MIR22HG-208ENST00000574306 2626 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A3P12111 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A3P12111 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL6A3P12111 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 DAP3-225ENST00000535183 1894 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 ALG1L13P-201ENST00000518201 521 ntTSL 5 BASIC13.35□□□□□ -0.27
COL6A3P12111 AP006287.1-201ENST00000533995 653 ntBASIC13.35□□□□□ -0.27
COL6A3P12111 APOC1P1-204ENST00000575148 560 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 MIR4686-201ENST00000584128 76 ntBASIC13.35□□□□□ -0.27
COL6A3P12111 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL6A3P12111 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 CRISP2-203ENST00000618917 1492 ntTSL 5 BASIC13.35□□□□□ -0.27
COL6A3P12111 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 TIRAP-202ENST00000392679 2195 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.35□□□□□ -0.27
COL6A3P12111 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 HDAC8-201ENST00000373554 833 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 GPR21-201ENST00000373642 1170 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
COL6A3P12111 AL157395.1-201ENST00000427630 438 ntTSL 3 BASIC13.35□□□□□ -0.27
COL6A3P12111 AL513523.3-201ENST00000434575 316 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 AL359504.1-201ENST00000448052 493 ntBASIC13.35□□□□□ -0.27
COL6A3P12111 CCDC58-205ENST00000479899 545 ntTSL 3 BASIC13.35□□□□□ -0.27
COL6A3P12111 AL139353.1-202ENST00000547378 474 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
COL6A3P12111 RNF41-211ENST00000552656 1193 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 MT3-206ENST00000570176 579 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 ARL16-207ENST00000573392 869 ntTSL 3 BASIC13.35□□□□□ -0.27
COL6A3P12111 RN7SL509P-201ENST00000579670 297 ntBASIC13.35□□□□□ -0.27
COL6A3P12111 MFSD12-215ENST00000615613 688 ntBASIC13.35□□□□□ -0.27
COL6A3P12111 AC005086.3-201ENST00000624984 219 ntBASIC13.35□□□□□ -0.27
COL6A3P12111 PASK-216ENST00000629419 216 ntTSL 5 BASIC13.35□□□□□ -0.27
COL6A3P12111 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 TGM5-207ENST00000622115 2202 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms