Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC13.31□□□□□ -0.28
PCNAP12004 AC242376.1-201ENST00000559033 726 ntBASIC13.31□□□□□ -0.28
PCNAP12004 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC13.31□□□□□ -0.28
PCNAP12004 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC13.31□□□□□ -0.28
PCNAP12004 MIR3677-201ENST00000578964 60 ntBASIC13.31□□□□□ -0.28
PCNAP12004 MIR4265-201ENST00000582152 99 ntBASIC13.31□□□□□ -0.28
PCNAP12004 AC103810.3-201ENST00000583567 96 ntBASIC13.31□□□□□ -0.28
PCNAP12004 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC13.31□□□□□ -0.28
PCNAP12004 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 AL353770.1-201ENST00000614915 403 ntBASIC13.31□□□□□ -0.28
PCNAP12004 HPX-213ENST00000615166 826 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 CU633904.3-201ENST00000624042 1029 ntBASIC13.31□□□□□ -0.28
PCNAP12004 CDK7-214ENST00000626796 358 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 PER1-202ENST00000354903 3115 ntTSL 2 BASIC13.31□□□□□ -0.28
PCNAP12004 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC13.31□□□□□ -0.28
PCNAP12004 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 BCAS4-202ENST00000371608 6680 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC13.31□□□□□ -0.28
PCNAP12004 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC13.31□□□□□ -0.28
PCNAP12004 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC13.31□□□□□ -0.28
PCNAP12004 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
PCNAP12004 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PCNAP12004 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC13.31□□□□□ -0.28
PCNAP12004 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC13.3□□□□□ -0.28
PCNAP12004 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 CCDC187-204ENST00000624277 3918 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC13.3□□□□□ -0.28
PCNAP12004 AC006372.4-201ENST00000624122 1543 ntBASIC13.3□□□□□ -0.28
PCNAP12004 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
PCNAP12004 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC13.3□□□□□ -0.28
PCNAP12004 CUL2-210ENST00000626172 4115 ntTSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC13.3□□□□□ -0.28
PCNAP12004 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.3□□□□□ -0.28
PCNAP12004 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 SIGLEC18P-201ENST00000602271 909 ntBASIC13.3□□□□□ -0.28
PCNAP12004 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
PCNAP12004 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 ANKRD36B-201ENST00000258459 5986 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
PCNAP12004 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC13.3□□□□□ -0.28
PCNAP12004 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 AC008040.5-201ENST00000599781 1781 ntBASIC13.3□□□□□ -0.28
PCNAP12004 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
PCNAP12004 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
PCNAP12004 FRMD6-203ENST00000395718 4828 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
PCNAP12004 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 HLA-DQB1-202ENST00000399079 1501 ntBASIC13.29□□□□□ -0.28
PCNAP12004 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
PCNAP12004 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 ITGAL-201ENST00000356798 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC13.29□□□□□ -0.28
PCNAP12004 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC13.29□□□□□ -0.28
PCNAP12004 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC13.29□□□□□ -0.28
PCNAP12004 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC13.29□□□□□ -0.28
PCNAP12004 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC13.29□□□□□ -0.28
PCNAP12004 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
PCNAP12004 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
PCNAP12004 AC106827.1-201ENST00000366454 431 ntBASIC13.29□□□□□ -0.28
PCNAP12004 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PCNAP12004 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms