Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RFC3P40938 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
RFC3P40938 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RFC3P40938 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RFC3P40938 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RFC3P40938 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.51□□□□□ -0.41
RFC3P40938 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
RFC3P40938 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
RFC3P40938 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RFC3P40938 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RFC3P40938 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC12.5□□□□□ -0.41
RFC3P40938 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
RFC3P40938 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC12.5□□□□□ -0.41
RFC3P40938 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC12.5□□□□□ -0.41
RFC3P40938 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
RFC3P40938 MIR1227-201ENST00000408484 88 ntBASIC12.5□□□□□ -0.41
RFC3P40938 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 FAM21EP-201ENST00000417804 985 ntBASIC12.5□□□□□ -0.41
RFC3P40938 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC12.5□□□□□ -0.41
RFC3P40938 AP000244.1-201ENST00000424582 201 ntBASIC12.5□□□□□ -0.41
RFC3P40938 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC12.5□□□□□ -0.41
RFC3P40938 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC12.5□□□□□ -0.41
RFC3P40938 AC010234.1-201ENST00000494599 870 ntBASIC12.5□□□□□ -0.41
RFC3P40938 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC12.5□□□□□ -0.41
RFC3P40938 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC12.5□□□□□ -0.41
RFC3P40938 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC12.5□□□□□ -0.41
RFC3P40938 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC12.5□□□□□ -0.41
RFC3P40938 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC12.5□□□□□ -0.41
RFC3P40938 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 AL160191.2-201ENST00000603975 601 ntBASIC12.5□□□□□ -0.41
RFC3P40938 MIR6756-201ENST00000616240 63 ntBASIC12.5□□□□□ -0.41
RFC3P40938 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 AL109809.1-201ENST00000418979 1367 ntBASIC12.5□□□□□ -0.41
RFC3P40938 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
RFC3P40938 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
RFC3P40938 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.5□□□□□ -0.41
RFC3P40938 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
RFC3P40938 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RFC3P40938 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
RFC3P40938 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
RFC3P40938 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.49□□□□□ -0.41
RFC3P40938 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC12.49□□□□□ -0.41
RFC3P40938 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 RCC2P5-201ENST00000492126 1487 ntBASIC12.49□□□□□ -0.41
RFC3P40938 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
RFC3P40938 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RFC3P40938 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
RFC3P40938 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC12.49□□□□□ -0.41
RFC3P40938 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC12.49□□□□□ -0.41
RFC3P40938 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms