Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CYP2B7P-202ENST00000593298 1087 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 MOCS1P1-201ENST00000564020 1612 ntBASIC13.39□□□□□ -0.27
COL6A3P12111 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC13.39□□□□□ -0.27
COL6A3P12111 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 TCTN3-204ENST00000430368 1778 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 MARK2P9-201ENST00000430958 1727 ntBASIC13.39□□□□□ -0.27
COL6A3P12111 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 LDLRAD1-203ENST00000420619 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 AL590705.1-202ENST00000366109 578 ntTSL 3 BASIC13.38□□□□□ -0.27
COL6A3P12111 AP001631.1-201ENST00000433840 1052 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 AC103591.1-201ENST00000448345 556 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 AC245595.1-202ENST00000457390 425 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A3P12111 XIAP-AS1-201ENST00000458331 482 ntTSL 3 BASIC13.38□□□□□ -0.27
COL6A3P12111 AC080023.2-201ENST00000532615 208 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 AC072062.1-201ENST00000617699 351 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A3P12111 FP236240.2-201ENST00000623896 1052 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 LINC00694-202ENST00000634610 769 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
COL6A3P12111 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A3P12111 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
COL6A3P12111 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 HRC-203ENST00000595625 2044 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A3P12111 FAM117A-209ENST00000513602 1522 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 PAXIP1-AS2-203ENST00000449486 2121 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 NNMT-201ENST00000299964 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 TMOD4-201ENST00000295314 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 SRMP1-201ENST00000398959 885 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 ACTG1P10-201ENST00000428275 1082 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 RN7SL265P-201ENST00000486808 300 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 FAU-206ENST00000529259 1125 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 AC051619.8-201ENST00000563103 308 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 AC025682.1-204ENST00000580045 733 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A3P12111 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 REPS1-205ENST00000415951 2424 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A3P12111 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A3P12111 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 KRT8P5-201ENST00000592443 1458 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 CFAP206-202ENST00000369562 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 AC073862.5-201ENST00000624129 2027 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC13.38□□□□□ -0.27
COL6A3P12111 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 GABPB1-210ENST00000560825 1412 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 MIR324-201ENST00000362183 83 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 HIST1H4C-201ENST00000377803 435 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
COL6A3P12111 TRAV38-2DV8-201ENST00000390465 395 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
COL6A3P12111 AC114489.1-201ENST00000421619 395 ntTSL 3 BASIC13.38□□□□□ -0.27
COL6A3P12111 AC004771.2-201ENST00000430920 439 ntTSL 3 BASIC13.38□□□□□ -0.27
COL6A3P12111 IQCF5-201ENST00000446461 512 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
COL6A3P12111 AC007493.1-201ENST00000637635 683 ntTSL 5 BASIC13.38□□□□□ -0.27
COL6A3P12111 AL109618.1-201ENST00000434910 1683 ntBASIC13.38□□□□□ -0.27
COL6A3P12111 HORMAD1-204ENST00000368995 1794 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL6A3P12111 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL6A3P12111 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 BTN2A2-206ENST00000469230 1790 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 AL355357.1-203ENST00000402154 639 ntBASIC13.37□□□□□ -0.27
COL6A3P12111 AL117350.1-201ENST00000418348 640 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 AC073346.1-201ENST00000441928 651 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A3P12111 CHIAP2-202ENST00000449687 669 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A3P12111 RN7SL831P-201ENST00000460344 319 ntBASIC13.37□□□□□ -0.27
COL6A3P12111 DHDDS-216ENST00000525682 1235 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 LAMTOR1-202ENST00000535107 619 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A3P12111 Metazoa_SRP.102-201ENST00000613350 315 ntBASIC13.37□□□□□ -0.27
COL6A3P12111 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
COL6A3P12111 RFC4-202ENST00000392481 1448 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL6A3P12111 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL6A3P12111 CDK5-201ENST00000297518 783 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL6A3P12111 AL050344.1-202ENST00000429666 614 ntTSL 3 BASIC13.37□□□□□ -0.27
COL6A3P12111 AC016650.1-201ENST00000502834 708 ntTSL 2 BASIC13.37□□□□□ -0.27
COL6A3P12111 AC133548.2-202ENST00000562267 148 ntBASIC13.37□□□□□ -0.27
COL6A3P12111 CA5AP1-201ENST00000568175 576 ntBASIC13.37□□□□□ -0.27
COL6A3P12111 SIGLEC21P-201ENST00000598990 1010 ntBASIC13.37□□□□□ -0.27
COL6A3P12111 AC027345.1-201ENST00000611900 500 ntBASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms