Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MRPL24-201ENST00000361531 883 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 HSD17B3-202ENST00000375263 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 MYH9-202ENST00000401701 789 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 HSPB1-202ENST00000429938 527 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 AC104561.2-201ENST00000523257 519 ntBASIC13.41□□□□□ -0.26
COL6A3P12111 AC007540.1-201ENST00000548473 507 ntTSL 3 BASIC13.41□□□□□ -0.26
COL6A3P12111 TRAPPC2L-202ENST00000561840 558 ntTSL 5 BASIC13.41□□□□□ -0.26
COL6A3P12111 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
COL6A3P12111 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
COL6A3P12111 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.41□□□□□ -0.26
COL6A3P12111 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.41□□□□□ -0.26
COL6A3P12111 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL6A3P12111 ACVR1C-202ENST00000335450 1501 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 B3GALT5-AS1-201ENST00000329618 1357 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 PRAMEF32P-201ENST00000431596 1068 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 CFL1P2-201ENST00000440986 684 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 ANKRD20A11P-205ENST00000442192 920 ntTSL 3 BASIC13.4□□□□□ -0.26
COL6A3P12111 IGHJ1P-201ENST00000450690 55 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 PRDM2-213ENST00000503842 705 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 AP005901.1-201ENST00000508721 1181 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 ACA64.6-201ENST00000516310 117 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 LINC02395-202ENST00000547443 724 ntTSL 3 BASIC13.4□□□□□ -0.26
COL6A3P12111 AC079385.2-201ENST00000547531 863 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 LINC02256-202ENST00000564670 543 ntTSL 4 BASIC13.4□□□□□ -0.26
COL6A3P12111 AC005580.1-201ENST00000592311 583 ntTSL 4 BASIC13.4□□□□□ -0.26
COL6A3P12111 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 ATAT1-204ENST00000330083 1728 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.4□□□□□ -0.26
COL6A3P12111 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.4□□□□□ -0.26
COL6A3P12111 RHOH-219ENST00000614836 2114 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
COL6A3P12111 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
COL6A3P12111 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 AC005324.2-201ENST00000433051 415 ntTSL 5 BASIC13.4□□□□□ -0.26
COL6A3P12111 MRO-205ENST00000436348 1125 ntTSL 5 BASIC13.4□□□□□ -0.26
COL6A3P12111 AL513283.1-201ENST00000441790 1087 ntTSL 5 BASIC13.4□□□□□ -0.26
COL6A3P12111 AC126177.1-202ENST00000548419 973 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 AC126471.1-201ENST00000550676 362 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 ALOX12-AS1-203ENST00000570562 567 ntTSL 3 BASIC13.4□□□□□ -0.26
COL6A3P12111 AP000897.2-202ENST00000579332 821 ntTSL 3 BASIC13.4□□□□□ -0.26
COL6A3P12111 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 CNTF-201ENST00000361987 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
COL6A3P12111 AC005562.1-201ENST00000583030 3219 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 AC020914.1-201ENST00000396477 1476 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
COL6A3P12111 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 GPHN-202ENST00000459628 1723 ntTSL 2 BASIC13.4□□□□□ -0.26
COL6A3P12111 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 C9orf3-201ENST00000277198 1966 ntTSL 2 BASIC13.4□□□□□ -0.26
COL6A3P12111 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 NSMCE2-201ENST00000287437 1195 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A3P12111 AL353747.1-201ENST00000404577 267 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 PRKRIP1-202ENST00000462601 884 ntTSL 2 BASIC13.4□□□□□ -0.26
COL6A3P12111 AP000842.1-201ENST00000524467 698 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 IGKV2D-28-202ENST00000558026 306 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 DSTYK-203ENST00000615388 1042 ntTSL 5 BASIC13.4□□□□□ -0.26
COL6A3P12111 AC092611.3-201ENST00000624858 718 ntBASIC13.4□□□□□ -0.26
COL6A3P12111 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
COL6A3P12111 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
COL6A3P12111 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
COL6A3P12111 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 TCEA3-203ENST00000450454 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 CYB5A-201ENST00000299438 718 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 OBP2A-202ENST00000342114 607 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 ZNF662-202ENST00000422021 436 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 CD59-205ENST00000437761 758 ntAPPRIS P2 TSL 4 BASIC13.39□□□□□ -0.27
COL6A3P12111 LINC00158-203ENST00000440205 740 ntTSL 3 BASIC13.39□□□□□ -0.27
COL6A3P12111 AC139887.2-204ENST00000503405 550 ntTSL 3 BASIC13.39□□□□□ -0.27
COL6A3P12111 AC104051.1-201ENST00000520426 570 ntTSL 4 BASIC13.39□□□□□ -0.27
COL6A3P12111 AC073655.1-201ENST00000550111 493 ntTSL 3 BASIC13.39□□□□□ -0.27
COL6A3P12111 AL390728.4-202ENST00000606173 430 ntTSL 3 BASIC13.39□□□□□ -0.27
COL6A3P12111 ANKRD20A2-203ENST00000611747 520 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 ANKRD20A4-203ENST00000615302 520 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 AL109618.3-201ENST00000622748 430 ntBASIC13.39□□□□□ -0.27
COL6A3P12111 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
COL6A3P12111 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 AACS-201ENST00000316519 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC13.39□□□□□ -0.27
COL6A3P12111 LRRC27-202ENST00000368612 1765 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 AC023824.1-201ENST00000562945 2975 ntBASIC13.39□□□□□ -0.27
COL6A3P12111 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
COL6A3P12111 SNAI1-201ENST00000244050 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A3P12111 NMRAL2P-201ENST00000306399 891 ntBASIC13.39□□□□□ -0.27
COL6A3P12111 AL121929.1-201ENST00000457120 524 ntTSL 3 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms