Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 AC005703.6-201ENST00000623265 1329 ntBASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.26■■□□□ 1.31
PCDHA3Q9Y5H8 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 FP325331.1-202ENST00000623531 1380 ntBASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 AC087742.1-201ENST00000575880 1738 ntBASIC23.25■■□□□ 1.31
PCDHA3Q9Y5H8 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 LINC01529-204ENST00000636474 1715 ntBASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC23.24■■□□□ 1.31
PCDHA3Q9Y5H8 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 AC139530.1-201ENST00000575312 1977 ntBASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA3Q9Y5H8 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
PCDHA3Q9Y5H8 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 BX664725.1-201ENST00000438252 379 ntBASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 AC137767.1-201ENST00000602918 1920 ntBASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA3Q9Y5H8 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA3Q9Y5H8 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms