Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 EDA-201ENST00000338901 1233 ntBASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 DUX4L19-201ENST00000557448 1267 ntBASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 AC233723.2-201ENST00000623798 2106 ntBASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHB3Q9Y5E6 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 AC092171.4-201ENST00000609130 632 ntBASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 AL355001.2-201ENST00000620617 1191 ntBASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDHB3Q9Y5E6 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 ZNRF2P3-201ENST00000424200 374 ntBASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 DUSP8P3-201ENST00000399571 1760 ntBASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 AC092068.2-201ENST00000590491 1708 ntBASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHB3Q9Y5E6 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 AC024257.2-201ENST00000549699 147 ntBASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHB3Q9Y5E6 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHB3Q9Y5E6 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.64■■□□□ 1.06
PCDHB3Q9Y5E6 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHB3Q9Y5E6 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 SUDS3P1-201ENST00000505831 966 ntBASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 RARRES2P6-201ENST00000567333 442 ntBASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHB3Q9Y5E6 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHB3Q9Y5E6 AC009102.2-201ENST00000606772 1639 ntBASIC21.62■■□□□ 1.05
PCDHB3Q9Y5E6 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHB3Q9Y5E6 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHB3Q9Y5E6 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.62■■□□□ 1.05
PCDHB3Q9Y5E6 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
PCDHB3Q9Y5E6 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
PCDHB3Q9Y5E6 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHB3Q9Y5E6 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms