Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.73■■□□□ 1.71
CTDP1Q9Y5B0 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.73■■□□□ 1.71
CTDP1Q9Y5B0 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.73■■□□□ 1.71
CTDP1Q9Y5B0 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CTDP1Q9Y5B0 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CTDP1Q9Y5B0 OR2I1P-207ENST00000453522 948 ntBASIC25.72■■□□□ 1.71
CTDP1Q9Y5B0 AC010525.1-201ENST00000585559 441 ntBASIC25.72■■□□□ 1.71
CTDP1Q9Y5B0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.72■■□□□ 1.71
CTDP1Q9Y5B0 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
CTDP1Q9Y5B0 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CTDP1Q9Y5B0 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC25.72■■□□□ 1.71
CTDP1Q9Y5B0 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
CTDP1Q9Y5B0 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.72■■□□□ 1.71
CTDP1Q9Y5B0 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CTDP1Q9Y5B0 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CTDP1Q9Y5B0 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CTDP1Q9Y5B0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
CTDP1Q9Y5B0 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
CTDP1Q9Y5B0 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CTDP1Q9Y5B0 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC25.71■■□□□ 1.71
CTDP1Q9Y5B0 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.71■■□□□ 1.71
CTDP1Q9Y5B0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CTDP1Q9Y5B0 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
CTDP1Q9Y5B0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
CTDP1Q9Y5B0 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 AL162430.1-201ENST00000480705 870 ntBASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTDP1Q9Y5B0 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 AL358852.1-201ENST00000623174 1268 ntBASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTDP1Q9Y5B0 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDP1Q9Y5B0 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 MIR572-201ENST00000384983 95 ntBASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.67■■□□□ 1.7
CTDP1Q9Y5B0 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
CTDP1Q9Y5B0 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CTDP1Q9Y5B0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 YBX1P1-201ENST00000445822 960 ntBASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 AL139125.2-201ENST00000623134 1869 ntBASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CTDP1Q9Y5B0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
CTDP1Q9Y5B0 AC034268.1-201ENST00000441047 882 ntBASIC25.64■■□□□ 1.7
CTDP1Q9Y5B0 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC25.64■■□□□ 1.7
CTDP1Q9Y5B0 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC25.64■■□□□ 1.7
CTDP1Q9Y5B0 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
CTDP1Q9Y5B0 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CTDP1Q9Y5B0 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CTDP1Q9Y5B0 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
CTDP1Q9Y5B0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
CTDP1Q9Y5B0 AC012414.1-201ENST00000556676 535 ntBASIC25.63■■□□□ 1.69
CTDP1Q9Y5B0 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.63■■□□□ 1.69
CTDP1Q9Y5B0 AL354811.1-201ENST00000610286 706 ntBASIC25.63■■□□□ 1.69
CTDP1Q9Y5B0 MIR6084-201ENST00000622012 110 ntBASIC25.63■■□□□ 1.69
CTDP1Q9Y5B0 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CTDP1Q9Y5B0 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms