Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM4Q9Y4Z0 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.76■□□□□ 0.43
LSM4Q9Y4Z0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
LSM4Q9Y4Z0 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM4Q9Y4Z0 AC131274.2-201ENST00000580697 1507 ntBASIC17.76■□□□□ 0.43
LSM4Q9Y4Z0 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM4Q9Y4Z0 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM4Q9Y4Z0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM4Q9Y4Z0 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 TSPY9P-201ENST00000440215 945 ntBASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 TSPY11P-201ENST00000442607 1045 ntBASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM4Q9Y4Z0 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 STK32C-205ENST00000456004 607 ntTSL 2 BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 AC092028.1-203ENST00000608262 953 ntBASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
LSM4Q9Y4Z0 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 MIR638-201ENST00000385237 100 ntBASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LSM4Q9Y4Z0 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 AC011551.1-201ENST00000614101 683 ntBASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.71■□□□□ 0.43
LSM4Q9Y4Z0 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LSM4Q9Y4Z0 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.7■□□□□ 0.42
LSM4Q9Y4Z0 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LSM4Q9Y4Z0 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.7■□□□□ 0.42
LSM4Q9Y4Z0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC17.7■□□□□ 0.42
LSM4Q9Y4Z0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LSM4Q9Y4Z0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LSM4Q9Y4Z0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 AL139246.5-201ENST00000606645 996 ntBASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.69■□□□□ 0.42
LSM4Q9Y4Z0 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms