Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
EXOSC3Q9NQT5 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
EXOSC3Q9NQT5 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
EXOSC3Q9NQT5 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
EXOSC3Q9NQT5 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
EXOSC3Q9NQT5 AC241377.3-202ENST00000626088 1088 ntBASIC20.31■□□□□ 0.84
EXOSC3Q9NQT5 AC241585.3-202ENST00000628937 1088 ntBASIC20.31■□□□□ 0.84
EXOSC3Q9NQT5 AC245100.8-202ENST00000629247 1058 ntBASIC20.31■□□□□ 0.84
EXOSC3Q9NQT5 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.31■□□□□ 0.84
EXOSC3Q9NQT5 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
EXOSC3Q9NQT5 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
EXOSC3Q9NQT5 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
EXOSC3Q9NQT5 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
EXOSC3Q9NQT5 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.3■□□□□ 0.84
EXOSC3Q9NQT5 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.3■□□□□ 0.84
EXOSC3Q9NQT5 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.3■□□□□ 0.84
EXOSC3Q9NQT5 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
EXOSC3Q9NQT5 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
EXOSC3Q9NQT5 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
EXOSC3Q9NQT5 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
EXOSC3Q9NQT5 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
EXOSC3Q9NQT5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 ESRRAP2-201ENST00000418437 1549 ntBASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
EXOSC3Q9NQT5 C1orf229-201ENST00000623686 2258 ntBASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 AL512631.2-201ENST00000604634 923 ntBASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 AL499627.2-201ENST00000606283 725 ntBASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
EXOSC3Q9NQT5 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.24■□□□□ 0.83
EXOSC3Q9NQT5 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
EXOSC3Q9NQT5 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.24■□□□□ 0.83
EXOSC3Q9NQT5 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
EXOSC3Q9NQT5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.24■□□□□ 0.83
EXOSC3Q9NQT5 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
EXOSC3Q9NQT5 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.24■□□□□ 0.83
EXOSC3Q9NQT5 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms