Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LRRC40Q9H9A6 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 KRT16P3-201ENST00000439127 1283 ntBASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 DUX4L4-201ENST00000566884 1269 ntBASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.55■■□□□ 1.2
LRRC40Q9H9A6 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
LRRC40Q9H9A6 C17orf82-201ENST00000623772 1530 ntBASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 GUSBP5-201ENST00000418136 578 ntBASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC40Q9H9A6 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
LRRC40Q9H9A6 ESRRAP2-201ENST00000418437 1549 ntBASIC22.52■■□□□ 1.19
LRRC40Q9H9A6 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC40Q9H9A6 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
LRRC40Q9H9A6 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC22.51■■□□□ 1.19
LRRC40Q9H9A6 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC22.51■■□□□ 1.19
LRRC40Q9H9A6 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
LRRC40Q9H9A6 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
LRRC40Q9H9A6 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.51■■□□□ 1.19
LRRC40Q9H9A6 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 AC009086.3-201ENST00000623486 1008 ntBASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC40Q9H9A6 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 GUSBP5-202ENST00000510805 1989 ntBASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
LRRC40Q9H9A6 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.48■■□□□ 1.19
LRRC40Q9H9A6 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC40Q9H9A6 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC40Q9H9A6 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.47■■□□□ 1.19
LRRC40Q9H9A6 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC40Q9H9A6 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC40Q9H9A6 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.47■■□□□ 1.19
LRRC40Q9H9A6 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms