Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 AC096631.2-201ENST00000436136 790 ntBASIC20.56■□□□□ 0.88
UBQLN3Q9H347 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
UBQLN3Q9H347 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBQLN3Q9H347 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
UBQLN3Q9H347 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBQLN3Q9H347 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBQLN3Q9H347 AL117328.2-201ENST00000624617 1940 ntBASIC20.55■□□□□ 0.88
UBQLN3Q9H347 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBQLN3Q9H347 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
UBQLN3Q9H347 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
UBQLN3Q9H347 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
UBQLN3Q9H347 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.55■□□□□ 0.88
UBQLN3Q9H347 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBQLN3Q9H347 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.55■□□□□ 0.88
UBQLN3Q9H347 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBQLN3Q9H347 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.54■□□□□ 0.88
UBQLN3Q9H347 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 AC233723.2-201ENST00000623798 2106 ntBASIC20.53■□□□□ 0.88
UBQLN3Q9H347 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 MIR638-201ENST00000385237 100 ntBASIC20.53■□□□□ 0.88
UBQLN3Q9H347 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UBQLN3Q9H347 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.52■□□□□ 0.88
UBQLN3Q9H347 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBQLN3Q9H347 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBQLN3Q9H347 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBQLN3Q9H347 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBQLN3Q9H347 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.52■□□□□ 0.88
UBQLN3Q9H347 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.52■□□□□ 0.88
UBQLN3Q9H347 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
UBQLN3Q9H347 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UBQLN3Q9H347 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.52■□□□□ 0.87
UBQLN3Q9H347 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.52■□□□□ 0.87
UBQLN3Q9H347 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
UBQLN3Q9H347 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 C1orf229-201ENST00000623686 2258 ntBASIC20.5■□□□□ 0.87
UBQLN3Q9H347 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBQLN3Q9H347 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 UNC93B3-201ENST00000308076 687 ntBASIC20.49■□□□□ 0.87
UBQLN3Q9H347 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 DUX4L19-201ENST00000557448 1267 ntBASIC20.49■□□□□ 0.87
UBQLN3Q9H347 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 AC133561.4-201ENST00000566112 224 ntBASIC20.49■□□□□ 0.87
UBQLN3Q9H347 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 AC092171.4-201ENST00000609130 632 ntBASIC20.49■□□□□ 0.87
UBQLN3Q9H347 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBQLN3Q9H347 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBQLN3Q9H347 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBQLN3Q9H347 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
UBQLN3Q9H347 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBQLN3Q9H347 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms