Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AP006294.2-201ENST00000641667 209 ntBASIC19.73■□□□□ 0.75
COL12A1Q99715 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL12A1Q99715 AC133637.1-201ENST00000624115 1537 ntBASIC19.73■□□□□ 0.75
COL12A1Q99715 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.72■□□□□ 0.75
COL12A1Q99715 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
COL12A1Q99715 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL12A1Q99715 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.72■□□□□ 0.75
COL12A1Q99715 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.72■□□□□ 0.75
COL12A1Q99715 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL12A1Q99715 SLC29A4P1-201ENST00000398760 971 ntBASIC19.72■□□□□ 0.75
COL12A1Q99715 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.72■□□□□ 0.75
COL12A1Q99715 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.72■□□□□ 0.75
COL12A1Q99715 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.72■□□□□ 0.75
COL12A1Q99715 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL12A1Q99715 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.72■□□□□ 0.75
COL12A1Q99715 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL12A1Q99715 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.71■□□□□ 0.75
COL12A1Q99715 AL022069.1-201ENST00000568025 1636 ntBASIC19.71■□□□□ 0.75
COL12A1Q99715 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL12A1Q99715 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL12A1Q99715 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL12A1Q99715 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.71■□□□□ 0.75
COL12A1Q99715 AC211429.1-201ENST00000415277 523 ntBASIC19.71■□□□□ 0.75
COL12A1Q99715 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL12A1Q99715 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL12A1Q99715 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL12A1Q99715 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
COL12A1Q99715 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.7■□□□□ 0.74
COL12A1Q99715 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL12A1Q99715 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL12A1Q99715 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
COL12A1Q99715 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.7■□□□□ 0.74
COL12A1Q99715 KRT18P11-201ENST00000435214 1283 ntBASIC19.7■□□□□ 0.74
COL12A1Q99715 TSPY6P-201ENST00000448518 926 ntBASIC19.7■□□□□ 0.74
COL12A1Q99715 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.7■□□□□ 0.74
COL12A1Q99715 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.7■□□□□ 0.74
COL12A1Q99715 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL12A1Q99715 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL12A1Q99715 SLC6A10P-202ENST00000431994 2058 ntBASIC19.7■□□□□ 0.74
COL12A1Q99715 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.7■□□□□ 0.74
COL12A1Q99715 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.7■□□□□ 0.74
COL12A1Q99715 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.7■□□□□ 0.74
COL12A1Q99715 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.7■□□□□ 0.74
COL12A1Q99715 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL12A1Q99715 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL12A1Q99715 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.69■□□□□ 0.74
COL12A1Q99715 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL12A1Q99715 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
COL12A1Q99715 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL12A1Q99715 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.69■□□□□ 0.74
COL12A1Q99715 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL12A1Q99715 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.69■□□□□ 0.74
COL12A1Q99715 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.69■□□□□ 0.74
COL12A1Q99715 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL12A1Q99715 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.69■□□□□ 0.74
COL12A1Q99715 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.68■□□□□ 0.74
COL12A1Q99715 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL12A1Q99715 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL12A1Q99715 AC135731.1-201ENST00000569415 2548 ntBASIC19.68■□□□□ 0.74
COL12A1Q99715 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.68■□□□□ 0.74
COL12A1Q99715 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL12A1Q99715 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL12A1Q99715 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL12A1Q99715 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL12A1Q99715 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL12A1Q99715 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL12A1Q99715 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL12A1Q99715 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL12A1Q99715 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL12A1Q99715 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL12A1Q99715 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.67■□□□□ 0.74
COL12A1Q99715 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL12A1Q99715 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL12A1Q99715 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL12A1Q99715 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL12A1Q99715 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL12A1Q99715 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.67■□□□□ 0.74
COL12A1Q99715 DUX4L4-201ENST00000566884 1269 ntBASIC19.66■□□□□ 0.74
COL12A1Q99715 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL12A1Q99715 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL12A1Q99715 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL12A1Q99715 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL12A1Q99715 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL12A1Q99715 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL12A1Q99715 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL12A1Q99715 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL12A1Q99715 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL12A1Q99715 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.66■□□□□ 0.74
COL12A1Q99715 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL12A1Q99715 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL12A1Q99715 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL12A1Q99715 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL12A1Q99715 SLC7A5P1-201ENST00000568957 537 ntBASIC19.65■□□□□ 0.74
COL12A1Q99715 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL12A1Q99715 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
COL12A1Q99715 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL12A1Q99715 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.65■□□□□ 0.74
COL12A1Q99715 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.65■□□□□ 0.74
COL12A1Q99715 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL12A1Q99715 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms