Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 MIR638-201ENST00000385237 100 ntBASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 AC011298.3-201ENST00000615796 283 ntBASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 AL353803.4-201ENST00000565882 1934 ntBASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD1Q96NR3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.92■□□□□ 0.94
PTCHD1Q96NR3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD1Q96NR3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.92■□□□□ 0.94
PTCHD1Q96NR3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.92■□□□□ 0.94
PTCHD1Q96NR3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD1Q96NR3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.92■□□□□ 0.94
PTCHD1Q96NR3 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.92■□□□□ 0.94
PTCHD1Q96NR3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.92■□□□□ 0.94
PTCHD1Q96NR3 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD1Q96NR3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTCHD1Q96NR3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTCHD1Q96NR3 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.91■□□□□ 0.94
PTCHD1Q96NR3 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.91■□□□□ 0.94
PTCHD1Q96NR3 AC133561.4-201ENST00000566112 224 ntBASIC20.91■□□□□ 0.94
PTCHD1Q96NR3 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PTCHD1Q96NR3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.91■□□□□ 0.94
PTCHD1Q96NR3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
PTCHD1Q96NR3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 MIR4767-201ENST00000582827 78 ntBASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 AC005837.3-201ENST00000612163 286 ntBASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
PTCHD1Q96NR3 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.89■□□□□ 0.94
PTCHD1Q96NR3 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PTCHD1Q96NR3 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTCHD1Q96NR3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.89■□□□□ 0.93
PTCHD1Q96NR3 AL499627.2-201ENST00000606283 725 ntBASIC20.89■□□□□ 0.93
PTCHD1Q96NR3 AC136469.2-201ENST00000623944 1028 ntBASIC20.89■□□□□ 0.93
PTCHD1Q96NR3 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.89■□□□□ 0.93
PTCHD1Q96NR3 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.89■□□□□ 0.93
PTCHD1Q96NR3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
PTCHD1Q96NR3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PTCHD1Q96NR3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTCHD1Q96NR3 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 AC092068.2-201ENST00000590491 1708 ntBASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 AC133637.1-201ENST00000624115 1537 ntBASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD1Q96NR3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 EDA-201ENST00000338901 1233 ntBASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.87■□□□□ 0.93
PTCHD1Q96NR3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 AL355001.2-201ENST00000620617 1191 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms