Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC24.01■■□□□ 1.43
VPS52Q8N1B4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
VPS52Q8N1B4 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC24.01■■□□□ 1.43
VPS52Q8N1B4 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24■■□□□ 1.43
VPS52Q8N1B4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC24■■□□□ 1.43
VPS52Q8N1B4 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
VPS52Q8N1B4 YBX1P1-201ENST00000445822 960 ntBASIC24■■□□□ 1.43
VPS52Q8N1B4 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC24■■□□□ 1.43
VPS52Q8N1B4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
VPS52Q8N1B4 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24■■□□□ 1.43
VPS52Q8N1B4 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC24■■□□□ 1.43
VPS52Q8N1B4 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
VPS52Q8N1B4 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
VPS52Q8N1B4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 AL031602.1-201ENST00000633169 911 ntBASIC23.99■■□□□ 1.43
VPS52Q8N1B4 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
VPS52Q8N1B4 LINC00543-201ENST00000567234 1845 ntBASIC23.98■■□□□ 1.43
VPS52Q8N1B4 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.98■■□□□ 1.43
VPS52Q8N1B4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.98■■□□□ 1.43
VPS52Q8N1B4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VPS52Q8N1B4 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
VPS52Q8N1B4 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS52Q8N1B4 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS52Q8N1B4 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.97■■□□□ 1.43
VPS52Q8N1B4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.97■■□□□ 1.43
VPS52Q8N1B4 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS52Q8N1B4 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.97■■□□□ 1.43
VPS52Q8N1B4 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
VPS52Q8N1B4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
VPS52Q8N1B4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.96■■□□□ 1.43
VPS52Q8N1B4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 AC133637.1-201ENST00000624115 1537 ntBASIC23.96■■□□□ 1.43
VPS52Q8N1B4 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 AL358852.1-201ENST00000623174 1268 ntBASIC23.96■■□□□ 1.43
VPS52Q8N1B4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
VPS52Q8N1B4 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.43
VPS52Q8N1B4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
VPS52Q8N1B4 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
VPS52Q8N1B4 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 IGHV3-19-201ENST00000521488 291 ntBASIC23.95■■□□□ 1.42
VPS52Q8N1B4 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 AC022517.1-201ENST00000592429 346 ntBASIC23.95■■□□□ 1.42
VPS52Q8N1B4 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.95■■□□□ 1.42
VPS52Q8N1B4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 KRT18P5-201ENST00000436075 1291 ntBASIC23.94■■□□□ 1.42
VPS52Q8N1B4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 IKBKGP1-201ENST00000612193 1073 ntBASIC23.94■■□□□ 1.42
VPS52Q8N1B4 RAB43-208ENST00000615093 783 ntTSL 5 BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VPS52Q8N1B4 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 MIR572-201ENST00000384983 95 ntBASIC23.93■■□□□ 1.42
VPS52Q8N1B4 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VPS52Q8N1B4 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms