Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
SH3RF1Q7Z6J0 C9orf163-202ENST00000624034 2573 ntBASIC25.53■■□□□ 1.68
SH3RF1Q7Z6J0 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SH3RF1Q7Z6J0 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.53■■□□□ 1.68
SH3RF1Q7Z6J0 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.53■■□□□ 1.68
SH3RF1Q7Z6J0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.53■■□□□ 1.68
SH3RF1Q7Z6J0 AC011298.3-201ENST00000615796 283 ntBASIC25.53■■□□□ 1.68
SH3RF1Q7Z6J0 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SH3RF1Q7Z6J0 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
SH3RF1Q7Z6J0 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.51■■□□□ 1.68
SH3RF1Q7Z6J0 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 H19-210ENST00000439725 1929 ntTSL 2 BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SH3RF1Q7Z6J0 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SH3RF1Q7Z6J0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.5■■□□□ 1.67
SH3RF1Q7Z6J0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SH3RF1Q7Z6J0 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SH3RF1Q7Z6J0 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SH3RF1Q7Z6J0 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC25.5■■□□□ 1.67
SH3RF1Q7Z6J0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
SH3RF1Q7Z6J0 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 DUSP8P3-201ENST00000399571 1760 ntBASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SH3RF1Q7Z6J0 REST-206ENST00000612429 1376 ntTSL 5 BASIC25.48■■□□□ 1.67
SH3RF1Q7Z6J0 REST-207ENST00000616975 1370 ntTSL 5 BASIC25.48■■□□□ 1.67
SH3RF1Q7Z6J0 AL138724.1-201ENST00000606771 1088 ntBASIC25.48■■□□□ 1.67
SH3RF1Q7Z6J0 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SH3RF1Q7Z6J0 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SH3RF1Q7Z6J0 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.48■■□□□ 1.67
SH3RF1Q7Z6J0 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 AC034268.1-201ENST00000441047 882 ntBASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 AL137784.2-201ENST00000607332 1000 ntBASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 AC092437.1-201ENST00000624794 1048 ntBASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SH3RF1Q7Z6J0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.46■■□□□ 1.67
SH3RF1Q7Z6J0 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms