Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 AC021242.3-201ENST00000607598 1377 ntBASIC21.53■■□□□ 1.04
RNF111Q6ZNA4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.53■■□□□ 1.04
RNF111Q6ZNA4 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF111Q6ZNA4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
RNF111Q6ZNA4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.53■■□□□ 1.04
RNF111Q6ZNA4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
RNF111Q6ZNA4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF111Q6ZNA4 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF111Q6ZNA4 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
RNF111Q6ZNA4 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.52■■□□□ 1.04
RNF111Q6ZNA4 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
RNF111Q6ZNA4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.51■■□□□ 1.03
RNF111Q6ZNA4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 MIR4787-201ENST00000607364 84 ntBASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF111Q6ZNA4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF111Q6ZNA4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF111Q6ZNA4 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RNF111Q6ZNA4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 AL022069.1-201ENST00000568025 1636 ntBASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF111Q6ZNA4 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms