Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC25.76■■□□□ 1.71
KRT40Q6A162 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
KRT40Q6A162 GCA-201ENST00000233612 1694 ntTSL 2 BASIC25.75■■□□□ 1.71
KRT40Q6A162 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
KRT40Q6A162 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
KRT40Q6A162 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
KRT40Q6A162 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
KRT40Q6A162 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.75■■□□□ 1.71
KRT40Q6A162 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
KRT40Q6A162 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC25.75■■□□□ 1.71
KRT40Q6A162 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.75■■□□□ 1.71
KRT40Q6A162 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
KRT40Q6A162 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
KRT40Q6A162 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
KRT40Q6A162 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
KRT40Q6A162 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.74■■□□□ 1.71
KRT40Q6A162 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC25.74■■□□□ 1.71
KRT40Q6A162 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
KRT40Q6A162 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.74■■□□□ 1.71
KRT40Q6A162 LINC01529-204ENST00000636474 1715 ntBASIC25.74■■□□□ 1.71
KRT40Q6A162 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
KRT40Q6A162 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
KRT40Q6A162 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
KRT40Q6A162 FP325331.1-202ENST00000623531 1380 ntBASIC25.73■■□□□ 1.71
KRT40Q6A162 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC25.73■■□□□ 1.71
KRT40Q6A162 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
KRT40Q6A162 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC25.73■■□□□ 1.71
KRT40Q6A162 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.73■■□□□ 1.71
KRT40Q6A162 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
KRT40Q6A162 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.73■■□□□ 1.71
KRT40Q6A162 COMT-203ENST00000403184 2217 ntTSL 2 BASIC25.73■■□□□ 1.71
KRT40Q6A162 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
KRT40Q6A162 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
KRT40Q6A162 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
KRT40Q6A162 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
KRT40Q6A162 C17orf82-201ENST00000623772 1530 ntBASIC25.73■■□□□ 1.71
KRT40Q6A162 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
KRT40Q6A162 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
KRT40Q6A162 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
KRT40Q6A162 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.72■■□□□ 1.71
KRT40Q6A162 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC25.72■■□□□ 1.71
KRT40Q6A162 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
KRT40Q6A162 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.72■■□□□ 1.71
KRT40Q6A162 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
KRT40Q6A162 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
KRT40Q6A162 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
KRT40Q6A162 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
KRT40Q6A162 EBPL-204ENST00000378272 766 ntTSL 3 BASIC25.71■■□□□ 1.71
KRT40Q6A162 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.71■■□□□ 1.71
KRT40Q6A162 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
KRT40Q6A162 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC25.71■■□□□ 1.71
KRT40Q6A162 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC25.71■■□□□ 1.71
KRT40Q6A162 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.71■■□□□ 1.71
KRT40Q6A162 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25.71■■□□□ 1.71
KRT40Q6A162 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
KRT40Q6A162 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
KRT40Q6A162 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
KRT40Q6A162 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
KRT40Q6A162 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
KRT40Q6A162 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC25.7■■□□□ 1.7
KRT40Q6A162 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
KRT40Q6A162 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.7■■□□□ 1.7
KRT40Q6A162 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
KRT40Q6A162 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
KRT40Q6A162 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
KRT40Q6A162 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC25.69■■□□□ 1.7
KRT40Q6A162 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
KRT40Q6A162 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC25.69■■□□□ 1.7
KRT40Q6A162 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
KRT40Q6A162 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC25.69■■□□□ 1.7
KRT40Q6A162 AC026271.2-201ENST00000428091 497 ntBASIC25.69■■□□□ 1.7
KRT40Q6A162 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.69■■□□□ 1.7
KRT40Q6A162 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
KRT40Q6A162 DUX4L4-201ENST00000566884 1269 ntBASIC25.68■■□□□ 1.7
KRT40Q6A162 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
KRT40Q6A162 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
KRT40Q6A162 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
KRT40Q6A162 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
KRT40Q6A162 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
KRT40Q6A162 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.67■■□□□ 1.7
KRT40Q6A162 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
KRT40Q6A162 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.67■■□□□ 1.7
KRT40Q6A162 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
KRT40Q6A162 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
KRT40Q6A162 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
KRT40Q6A162 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
KRT40Q6A162 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
KRT40Q6A162 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC25.66■■□□□ 1.7
KRT40Q6A162 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
KRT40Q6A162 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
KRT40Q6A162 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
KRT40Q6A162 AC133561.4-201ENST00000566112 224 ntBASIC25.66■■□□□ 1.7
KRT40Q6A162 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25.66■■□□□ 1.7
KRT40Q6A162 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
KRT40Q6A162 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
KRT40Q6A162 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
KRT40Q6A162 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC25.66■■□□□ 1.7
KRT40Q6A162 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
KRT40Q6A162 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.65■■□□□ 1.7
KRT40Q6A162 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms