Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 AC010980.1-201ENST00000587192 1142 ntBASIC21■□□□□ 0.95
RUNDC3AQ59EK9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 AC144652.1-201ENST00000609974 1624 ntBASIC21■□□□□ 0.95
RUNDC3AQ59EK9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21■□□□□ 0.95
RUNDC3AQ59EK9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 AC080038.3-201ENST00000623346 1952 ntBASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 AC087742.1-201ENST00000575880 1738 ntBASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RUNDC3AQ59EK9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 C11orf96-202ENST00000528572 1834 ntBASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 AC007375.3-201ENST00000600936 2314 ntBASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RUNDC3AQ59EK9 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RUNDC3AQ59EK9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 SNX5-217ENST00000606557 1087 ntBASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RUNDC3AQ59EK9 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RUNDC3AQ59EK9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.95■□□□□ 0.94
RUNDC3AQ59EK9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RUNDC3AQ59EK9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RUNDC3AQ59EK9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.95■□□□□ 0.94
RUNDC3AQ59EK9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
RUNDC3AQ59EK9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
RUNDC3AQ59EK9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RUNDC3AQ59EK9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 MIR4508-201ENST00000584178 70 ntBASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RUNDC3AQ59EK9 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
RUNDC3AQ59EK9 TSPY13P-201ENST00000338964 914 ntBASIC20.93■□□□□ 0.94
RUNDC3AQ59EK9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.93■□□□□ 0.94
RUNDC3AQ59EK9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms