Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
UBA52P62987 MTDHP2-201ENST00000601468 714 ntBASIC19.01■□□□□ 0.63
UBA52P62987 AL117332.1-201ENST00000622628 974 ntBASIC19.01■□□□□ 0.63
UBA52P62987 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
UBA52P62987 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBA52P62987 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBA52P62987 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBA52P62987 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
UBA52P62987 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19■□□□□ 0.63
UBA52P62987 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
UBA52P62987 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19■□□□□ 0.63
UBA52P62987 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19■□□□□ 0.63
UBA52P62987 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19■□□□□ 0.63
UBA52P62987 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
UBA52P62987 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
UBA52P62987 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19■□□□□ 0.63
UBA52P62987 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
UBA52P62987 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
UBA52P62987 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC19■□□□□ 0.63
UBA52P62987 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
UBA52P62987 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19■□□□□ 0.63
UBA52P62987 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19■□□□□ 0.63
UBA52P62987 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
UBA52P62987 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
UBA52P62987 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBA52P62987 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
UBA52P62987 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBA52P62987 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
UBA52P62987 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.99■□□□□ 0.63
UBA52P62987 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.99■□□□□ 0.63
UBA52P62987 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.99■□□□□ 0.63
UBA52P62987 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.99■□□□□ 0.63
UBA52P62987 MIR6724-1-201ENST00000616420 92 ntBASIC18.99■□□□□ 0.63
UBA52P62987 MIR6724-2-201ENST00000616483 92 ntBASIC18.99■□□□□ 0.63
UBA52P62987 MIR6724-4-201ENST00000617390 92 ntBASIC18.99■□□□□ 0.63
UBA52P62987 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.99■□□□□ 0.63
UBA52P62987 MIR6724-3-201ENST00000622482 92 ntBASIC18.99■□□□□ 0.63
UBA52P62987 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.99■□□□□ 0.63
UBA52P62987 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.99■□□□□ 0.63
UBA52P62987 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
UBA52P62987 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBA52P62987 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBA52P62987 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.99■□□□□ 0.63
UBA52P62987 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
UBA52P62987 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBA52P62987 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
UBA52P62987 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.98■□□□□ 0.63
UBA52P62987 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
UBA52P62987 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.98■□□□□ 0.63
UBA52P62987 MIR3621-201ENST00000580529 85 ntBASIC18.98■□□□□ 0.63
UBA52P62987 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBA52P62987 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBA52P62987 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
UBA52P62987 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
UBA52P62987 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
UBA52P62987 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBA52P62987 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.98■□□□□ 0.63
UBA52P62987 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.97■□□□□ 0.63
UBA52P62987 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
UBA52P62987 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.97■□□□□ 0.63
UBA52P62987 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.97■□□□□ 0.63
UBA52P62987 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.97■□□□□ 0.63
UBA52P62987 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.97■□□□□ 0.63
UBA52P62987 AL356740.2-201ENST00000601559 647 ntBASIC18.97■□□□□ 0.63
UBA52P62987 AC011551.1-201ENST00000614101 683 ntBASIC18.97■□□□□ 0.63
UBA52P62987 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
UBA52P62987 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.97■□□□□ 0.63
UBA52P62987 AL137060.1-201ENST00000618151 2648 ntBASIC18.97■□□□□ 0.63
UBA52P62987 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
UBA52P62987 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
UBA52P62987 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.97■□□□□ 0.63
UBA52P62987 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
UBA52P62987 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
UBA52P62987 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC18.96■□□□□ 0.63
UBA52P62987 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
UBA52P62987 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.96■□□□□ 0.63
UBA52P62987 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
UBA52P62987 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
UBA52P62987 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.96■□□□□ 0.63
UBA52P62987 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.96■□□□□ 0.63
UBA52P62987 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
UBA52P62987 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
UBA52P62987 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.96■□□□□ 0.63
UBA52P62987 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
UBA52P62987 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
UBA52P62987 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.96■□□□□ 0.63
UBA52P62987 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
UBA52P62987 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
UBA52P62987 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.96■□□□□ 0.63
UBA52P62987 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
UBA52P62987 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.95■□□□□ 0.62
UBA52P62987 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
UBA52P62987 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
UBA52P62987 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
UBA52P62987 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.95■□□□□ 0.62
UBA52P62987 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
UBA52P62987 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
UBA52P62987 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
UBA52P62987 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
UBA52P62987 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms