Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH11P55287 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH11P55287 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH11P55287 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH11P55287 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH11P55287 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH11P55287 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.29■□□□□ 0.84
CDH11P55287 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CDH11P55287 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH11P55287 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH11P55287 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH11P55287 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
CDH11P55287 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.28■□□□□ 0.84
CDH11P55287 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH11P55287 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.28■□□□□ 0.84
CDH11P55287 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDH11P55287 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH11P55287 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH11P55287 AC131274.2-201ENST00000580697 1507 ntBASIC20.27■□□□□ 0.84
CDH11P55287 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH11P55287 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH11P55287 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH11P55287 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH11P55287 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH11P55287 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH11P55287 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH11P55287 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CDH11P55287 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CDH11P55287 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CDH11P55287 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.27■□□□□ 0.84
CDH11P55287 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH11P55287 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.27■□□□□ 0.84
CDH11P55287 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CDH11P55287 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH11P55287 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CDH11P55287 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH11P55287 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH11P55287 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.26■□□□□ 0.83
CDH11P55287 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH11P55287 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH11P55287 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH11P55287 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH11P55287 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH11P55287 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CDH11P55287 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH11P55287 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CDH11P55287 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
CDH11P55287 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH11P55287 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH11P55287 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.25■□□□□ 0.83
CDH11P55287 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH11P55287 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH11P55287 AC092028.1-203ENST00000608262 953 ntBASIC20.25■□□□□ 0.83
CDH11P55287 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.25■□□□□ 0.83
CDH11P55287 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH11P55287 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH11P55287 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH11P55287 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH11P55287 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH11P55287 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH11P55287 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH11P55287 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.24■□□□□ 0.83
CDH11P55287 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.24■□□□□ 0.83
CDH11P55287 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.24■□□□□ 0.83
CDH11P55287 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CDH11P55287 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CDH11P55287 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH11P55287 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH11P55287 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH11P55287 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.23■□□□□ 0.83
CDH11P55287 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH11P55287 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDH11P55287 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDH11P55287 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH11P55287 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.23■□□□□ 0.83
CDH11P55287 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CDH11P55287 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH11P55287 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.23■□□□□ 0.83
CDH11P55287 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDH11P55287 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
CDH11P55287 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CDH11P55287 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.23■□□□□ 0.83
CDH11P55287 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH11P55287 AC242852.2-201ENST00000615738 1807 ntBASIC20.23■□□□□ 0.83
CDH11P55287 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.22■□□□□ 0.83
CDH11P55287 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDH11P55287 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDH11P55287 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CDH11P55287 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDH11P55287 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDH11P55287 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
CDH11P55287 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.22■□□□□ 0.83
CDH11P55287 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CDH11P55287 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
CDH11P55287 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDH11P55287 ESRRAP2-201ENST00000418437 1549 ntBASIC20.22■□□□□ 0.83
CDH11P55287 AC137767.1-201ENST00000602918 1920 ntBASIC20.21■□□□□ 0.83
CDH11P55287 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDH11P55287 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDH11P55287 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms