Protein–RNA interactions for Protein: P48764

SLC9A3, Sodium/hydrogen exchanger 3, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC9A3P48764 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.29■□□□□ 0.84
SLC9A3P48764 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC9A3P48764 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SLC9A3P48764 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC9A3P48764 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC9A3P48764 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SLC9A3P48764 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC9A3P48764 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC9A3P48764 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC9A3P48764 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC9A3P48764 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.28■□□□□ 0.84
SLC9A3P48764 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC9A3P48764 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC9A3P48764 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC9A3P48764 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC9A3P48764 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.28■□□□□ 0.84
SLC9A3P48764 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC9A3P48764 ECEL1P1-201ENST00000373592 1742 ntBASIC20.27■□□□□ 0.84
SLC9A3P48764 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC9A3P48764 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.27■□□□□ 0.84
SLC9A3P48764 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC9A3P48764 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC9A3P48764 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SLC9A3P48764 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC9A3P48764 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SLC9A3P48764 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC9A3P48764 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.27■□□□□ 0.84
SLC9A3P48764 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.27■□□□□ 0.84
SLC9A3P48764 AL031848.2-201ENST00000607670 837 ntBASIC20.27■□□□□ 0.84
SLC9A3P48764 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC9A3P48764 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
SLC9A3P48764 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SLC9A3P48764 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SLC9A3P48764 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SLC9A3P48764 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC9A3P48764 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC9A3P48764 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.26■□□□□ 0.83
SLC9A3P48764 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC9A3P48764 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC9A3P48764 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC9A3P48764 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.26■□□□□ 0.83
SLC9A3P48764 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC9A3P48764 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.26■□□□□ 0.83
SLC9A3P48764 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC9A3P48764 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.26■□□□□ 0.83
SLC9A3P48764 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC9A3P48764 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC9A3P48764 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC9A3P48764 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SLC9A3P48764 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC9A3P48764 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC9A3P48764 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC9A3P48764 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC9A3P48764 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.25■□□□□ 0.83
SLC9A3P48764 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.25■□□□□ 0.83
SLC9A3P48764 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SLC9A3P48764 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC9A3P48764 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC9A3P48764 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC9A3P48764 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SLC9A3P48764 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC9A3P48764 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC9A3P48764 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC9A3P48764 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC9A3P48764 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.24■□□□□ 0.83
SLC9A3P48764 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC9A3P48764 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC9A3P48764 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SLC9A3P48764 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SLC9A3P48764 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC9A3P48764 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC9A3P48764 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC9A3P48764 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC9A3P48764 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC9A3P48764 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC9A3P48764 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC9A3P48764 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
SLC9A3P48764 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SLC9A3P48764 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SLC9A3P48764 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.23■□□□□ 0.83
SLC9A3P48764 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.23■□□□□ 0.83
SLC9A3P48764 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SLC9A3P48764 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SLC9A3P48764 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.23■□□□□ 0.83
SLC9A3P48764 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.23■□□□□ 0.83
SLC9A3P48764 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.23■□□□□ 0.83
SLC9A3P48764 ESRRAP2-201ENST00000418437 1549 ntBASIC20.22■□□□□ 0.83
SLC9A3P48764 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SLC9A3P48764 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC9A3P48764 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC9A3P48764 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
SLC9A3P48764 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC9A3P48764 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.22■□□□□ 0.83
SLC9A3P48764 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.22■□□□□ 0.83
SLC9A3P48764 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC9A3P48764 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
SLC9A3P48764 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.22■□□□□ 0.83
SLC9A3P48764 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC9A3P48764 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC9A3P48764 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms