Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RFC3P40938 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
RFC3P40938 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
RFC3P40938 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RFC3P40938 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RFC3P40938 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFC3P40938 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RFC3P40938 IRS3P-201ENST00000223076 1006 ntBASIC20.3■□□□□ 0.84
RFC3P40938 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.3■□□□□ 0.84
RFC3P40938 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFC3P40938 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RFC3P40938 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.3■□□□□ 0.84
RFC3P40938 AC144652.1-201ENST00000609974 1624 ntBASIC20.3■□□□□ 0.84
RFC3P40938 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RFC3P40938 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RFC3P40938 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.29■□□□□ 0.84
RFC3P40938 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.29■□□□□ 0.84
RFC3P40938 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.29■□□□□ 0.84
RFC3P40938 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
RFC3P40938 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.29■□□□□ 0.84
RFC3P40938 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
RFC3P40938 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.29■□□□□ 0.84
RFC3P40938 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.29■□□□□ 0.84
RFC3P40938 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC3P40938 AC133561.1-201ENST00000568600 2415 ntBASIC20.28■□□□□ 0.84
RFC3P40938 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.28■□□□□ 0.84
RFC3P40938 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFC3P40938 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFC3P40938 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFC3P40938 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.28■□□□□ 0.84
RFC3P40938 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.28■□□□□ 0.84
RFC3P40938 AC010525.1-201ENST00000585559 441 ntBASIC20.28■□□□□ 0.84
RFC3P40938 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.28■□□□□ 0.84
RFC3P40938 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.28■□□□□ 0.84
RFC3P40938 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.28■□□□□ 0.84
RFC3P40938 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFC3P40938 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFC3P40938 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RFC3P40938 TSPY26P-201ENST00000476365 1326 ntBASIC20.27■□□□□ 0.84
RFC3P40938 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 LINC01529-204ENST00000636474 1715 ntBASIC20.27■□□□□ 0.84
RFC3P40938 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.27■□□□□ 0.84
RFC3P40938 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.27■□□□□ 0.84
RFC3P40938 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.27■□□□□ 0.84
RFC3P40938 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.27■□□□□ 0.84
RFC3P40938 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RFC3P40938 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC3P40938 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RFC3P40938 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFC3P40938 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFC3P40938 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RFC3P40938 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
RFC3P40938 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFC3P40938 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFC3P40938 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.26■□□□□ 0.83
RFC3P40938 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.26■□□□□ 0.83
RFC3P40938 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFC3P40938 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.26■□□□□ 0.83
RFC3P40938 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFC3P40938 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFC3P40938 FP325331.1-202ENST00000623531 1380 ntBASIC20.25■□□□□ 0.83
RFC3P40938 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFC3P40938 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.25■□□□□ 0.83
RFC3P40938 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.25■□□□□ 0.83
RFC3P40938 DUX4L4-201ENST00000566884 1269 ntBASIC20.25■□□□□ 0.83
RFC3P40938 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.25■□□□□ 0.83
RFC3P40938 AL499627.2-201ENST00000606283 725 ntBASIC20.25■□□□□ 0.83
RFC3P40938 AC087623.3-201ENST00000607047 1098 ntBASIC20.25■□□□□ 0.83
RFC3P40938 MIR5787-201ENST00000611784 55 ntBASIC20.25■□□□□ 0.83
RFC3P40938 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
RFC3P40938 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.25■□□□□ 0.83
RFC3P40938 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RFC3P40938 AC079630.1-202ENST00000618127 1840 ntBASIC20.25■□□□□ 0.83
RFC3P40938 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFC3P40938 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFC3P40938 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFC3P40938 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFC3P40938 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.24■□□□□ 0.83
RFC3P40938 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms