Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 KRT18P60-201ENST00000312876 1297 ntBASIC20.88■□□□□ 0.93
CLPTM1O96005 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CLPTM1O96005 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CLPTM1O96005 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLPTM1O96005 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLPTM1O96005 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLPTM1O96005 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CLPTM1O96005 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLPTM1O96005 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CLPTM1O96005 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLPTM1O96005 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CLPTM1O96005 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLPTM1O96005 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CLPTM1O96005 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CLPTM1O96005 AC092053.2-201ENST00000640557 1818 ntBASIC20.87■□□□□ 0.93
CLPTM1O96005 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLPTM1O96005 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CLPTM1O96005 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.87■□□□□ 0.93
CLPTM1O96005 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CLPTM1O96005 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLPTM1O96005 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CLPTM1O96005 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.86■□□□□ 0.93
CLPTM1O96005 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.86■□□□□ 0.93
CLPTM1O96005 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLPTM1O96005 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.86■□□□□ 0.93
CLPTM1O96005 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.86■□□□□ 0.93
CLPTM1O96005 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.86■□□□□ 0.93
CLPTM1O96005 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLPTM1O96005 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.86■□□□□ 0.93
CLPTM1O96005 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLPTM1O96005 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLPTM1O96005 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.86■□□□□ 0.93
CLPTM1O96005 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLPTM1O96005 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CLPTM1O96005 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLPTM1O96005 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLPTM1O96005 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLPTM1O96005 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
CLPTM1O96005 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLPTM1O96005 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLPTM1O96005 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CLPTM1O96005 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.85■□□□□ 0.93
CLPTM1O96005 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLPTM1O96005 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLPTM1O96005 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.84■□□□□ 0.93
CLPTM1O96005 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.84■□□□□ 0.93
CLPTM1O96005 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLPTM1O96005 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLPTM1O96005 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CLPTM1O96005 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.84■□□□□ 0.93
CLPTM1O96005 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.84■□□□□ 0.93
CLPTM1O96005 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLPTM1O96005 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CLPTM1O96005 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.84■□□□□ 0.93
CLPTM1O96005 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLPTM1O96005 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLPTM1O96005 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLPTM1O96005 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
CLPTM1O96005 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLPTM1O96005 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.83■□□□□ 0.93
CLPTM1O96005 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLPTM1O96005 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLPTM1O96005 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLPTM1O96005 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.83■□□□□ 0.93
CLPTM1O96005 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.83■□□□□ 0.93
CLPTM1O96005 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLPTM1O96005 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLPTM1O96005 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLPTM1O96005 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLPTM1O96005 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLPTM1O96005 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.83■□□□□ 0.92
CLPTM1O96005 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.83■□□□□ 0.92
CLPTM1O96005 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.83■□□□□ 0.92
CLPTM1O96005 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLPTM1O96005 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLPTM1O96005 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CLPTM1O96005 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.82■□□□□ 0.92
CLPTM1O96005 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CLPTM1O96005 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.82■□□□□ 0.92
CLPTM1O96005 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.82■□□□□ 0.92
CLPTM1O96005 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLPTM1O96005 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CLPTM1O96005 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLPTM1O96005 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms