Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
ZIC3O60481 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZIC3O60481 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.1■□□□□ 0.81
ZIC3O60481 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.1■□□□□ 0.81
ZIC3O60481 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.1■□□□□ 0.81
ZIC3O60481 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZIC3O60481 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
ZIC3O60481 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.1■□□□□ 0.81
ZIC3O60481 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.1■□□□□ 0.81
ZIC3O60481 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
ZIC3O60481 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
ZIC3O60481 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.09■□□□□ 0.81
ZIC3O60481 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZIC3O60481 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZIC3O60481 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZIC3O60481 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.09■□□□□ 0.81
ZIC3O60481 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.09■□□□□ 0.81
ZIC3O60481 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.09■□□□□ 0.81
ZIC3O60481 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
ZIC3O60481 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
ZIC3O60481 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZIC3O60481 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ZIC3O60481 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZIC3O60481 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
ZIC3O60481 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ZIC3O60481 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZIC3O60481 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZIC3O60481 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZIC3O60481 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.08■□□□□ 0.81
ZIC3O60481 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.08■□□□□ 0.81
ZIC3O60481 AP001330.3-201ENST00000520123 633 ntBASIC20.08■□□□□ 0.81
ZIC3O60481 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
ZIC3O60481 AC142381.2-201ENST00000566120 298 ntBASIC20.08■□□□□ 0.81
ZIC3O60481 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.08■□□□□ 0.81
ZIC3O60481 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.08■□□□□ 0.8
ZIC3O60481 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZIC3O60481 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZIC3O60481 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZIC3O60481 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.08■□□□□ 0.8
ZIC3O60481 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.07■□□□□ 0.8
ZIC3O60481 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZIC3O60481 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.07■□□□□ 0.8
ZIC3O60481 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.07■□□□□ 0.8
ZIC3O60481 MIR939-201ENST00000401314 82 ntBASIC20.07■□□□□ 0.8
ZIC3O60481 AF213884.3-201ENST00000563833 479 ntBASIC20.07■□□□□ 0.8
ZIC3O60481 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZIC3O60481 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZIC3O60481 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZIC3O60481 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
ZIC3O60481 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZIC3O60481 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.07■□□□□ 0.8
ZIC3O60481 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.07■□□□□ 0.8
ZIC3O60481 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZIC3O60481 AC019069.1-201ENST00000610008 1333 ntBASIC20.06■□□□□ 0.8
ZIC3O60481 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.06■□□□□ 0.8
ZIC3O60481 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZIC3O60481 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZIC3O60481 AC008764.7-201ENST00000593779 1081 ntBASIC20.06■□□□□ 0.8
ZIC3O60481 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZIC3O60481 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.06■□□□□ 0.8
ZIC3O60481 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZIC3O60481 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZIC3O60481 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZIC3O60481 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZIC3O60481 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZIC3O60481 BX842568.3-201ENST00000418104 571 ntBASIC20.05■□□□□ 0.8
ZIC3O60481 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
ZIC3O60481 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.05■□□□□ 0.8
ZIC3O60481 AC233992.3-201ENST00000607491 485 ntBASIC20.05■□□□□ 0.8
ZIC3O60481 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZIC3O60481 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
ZIC3O60481 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZIC3O60481 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZIC3O60481 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.05■□□□□ 0.8
ZIC3O60481 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZIC3O60481 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
ZIC3O60481 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZIC3O60481 DUSP8P3-201ENST00000399571 1760 ntBASIC20.04■□□□□ 0.8
ZIC3O60481 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.04■□□□□ 0.8
ZIC3O60481 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZIC3O60481 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
ZIC3O60481 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZIC3O60481 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.04■□□□□ 0.8
ZIC3O60481 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZIC3O60481 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZIC3O60481 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
ZIC3O60481 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ZIC3O60481 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.04■□□□□ 0.8
ZIC3O60481 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.03■□□□□ 0.8
ZIC3O60481 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
ZIC3O60481 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.03■□□□□ 0.8
ZIC3O60481 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.03■□□□□ 0.8
ZIC3O60481 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
ZIC3O60481 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.03■□□□□ 0.8
ZIC3O60481 AC004687.1-201ENST00000579003 1625 ntBASIC20.03■□□□□ 0.8
ZIC3O60481 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZIC3O60481 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZIC3O60481 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZIC3O60481 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZIC3O60481 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms