Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGN4O00479 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.72■□□□□ 0.91
HMGN4O00479 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGN4O00479 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGN4O00479 LINC00526-201ENST00000581067 1875 ntBASIC20.72■□□□□ 0.91
HMGN4O00479 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGN4O00479 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGN4O00479 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
HMGN4O00479 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGN4O00479 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
HMGN4O00479 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.71■□□□□ 0.91
HMGN4O00479 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.71■□□□□ 0.91
HMGN4O00479 AL451085.2-201ENST00000605085 799 ntBASIC20.71■□□□□ 0.91
HMGN4O00479 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGN4O00479 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGN4O00479 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGN4O00479 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGN4O00479 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGN4O00479 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGN4O00479 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGN4O00479 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGN4O00479 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
HMGN4O00479 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
HMGN4O00479 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGN4O00479 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGN4O00479 AC127496.7-201ENST00000625110 1798 ntBASIC20.7■□□□□ 0.9
HMGN4O00479 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.7■□□□□ 0.9
HMGN4O00479 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGN4O00479 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGN4O00479 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGN4O00479 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGN4O00479 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGN4O00479 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HMGN4O00479 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
HMGN4O00479 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGN4O00479 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
HMGN4O00479 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HMGN4O00479 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HMGN4O00479 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGN4O00479 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HMGN4O00479 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGN4O00479 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGN4O00479 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGN4O00479 AC009102.2-201ENST00000606772 1639 ntBASIC20.68■□□□□ 0.9
HMGN4O00479 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
HMGN4O00479 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGN4O00479 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HMGN4O00479 AC010997.5-201ENST00000609182 354 ntBASIC20.68■□□□□ 0.9
HMGN4O00479 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.68■□□□□ 0.9
HMGN4O00479 AC242852.2-201ENST00000615738 1807 ntBASIC20.68■□□□□ 0.9
HMGN4O00479 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HMGN4O00479 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HMGN4O00479 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGN4O00479 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGN4O00479 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.68■□□□□ 0.9
HMGN4O00479 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGN4O00479 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.67■□□□□ 0.9
HMGN4O00479 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGN4O00479 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
HMGN4O00479 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGN4O00479 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.67■□□□□ 0.9
HMGN4O00479 TSPY9P-201ENST00000440215 945 ntBASIC20.67■□□□□ 0.9
HMGN4O00479 TSPY11P-201ENST00000442607 1045 ntBASIC20.67■□□□□ 0.9
HMGN4O00479 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
HMGN4O00479 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGN4O00479 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGN4O00479 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HMGN4O00479 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGN4O00479 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
HMGN4O00479 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGN4O00479 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGN4O00479 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGN4O00479 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGN4O00479 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
HMGN4O00479 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.66■□□□□ 0.9
HMGN4O00479 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.66■□□□□ 0.9
HMGN4O00479 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 DUX4L4-201ENST00000566884 1269 ntBASIC20.66■□□□□ 0.9
HMGN4O00479 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.66■□□□□ 0.9
HMGN4O00479 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGN4O00479 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGN4O00479 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HMGN4O00479 AC087742.1-201ENST00000575880 1738 ntBASIC20.65■□□□□ 0.9
HMGN4O00479 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HMGN4O00479 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HMGN4O00479 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGN4O00479 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.65■□□□□ 0.9
HMGN4O00479 LINC00565-201ENST00000562710 2331 ntBASIC20.65■□□□□ 0.9
HMGN4O00479 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGN4O00479 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
HMGN4O00479 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGN4O00479 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms