Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TRIM43BA6NCK2 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
TRIM43BA6NCK2 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM43BA6NCK2 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
TRIM43BA6NCK2 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC24.55■■□□□ 1.52
TRIM43BA6NCK2 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TRIM43BA6NCK2 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC24.55■■□□□ 1.52
TRIM43BA6NCK2 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.55■■□□□ 1.52
TRIM43BA6NCK2 WT1-AS_3.1-201ENST00000613262 234 ntBASIC24.55■■□□□ 1.52
TRIM43BA6NCK2 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
TRIM43BA6NCK2 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
TRIM43BA6NCK2 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
TRIM43BA6NCK2 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC24.54■■□□□ 1.52
TRIM43BA6NCK2 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TRIM43BA6NCK2 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
TRIM43BA6NCK2 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
TRIM43BA6NCK2 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC24.54■■□□□ 1.52
TRIM43BA6NCK2 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.54■■□□□ 1.52
TRIM43BA6NCK2 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC24.54■■□□□ 1.52
TRIM43BA6NCK2 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 CD99P1-205ENST00000527459 561 ntBASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRIM43BA6NCK2 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRIM43BA6NCK2 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC24.52■■□□□ 1.52
TRIM43BA6NCK2 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRIM43BA6NCK2 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC24.52■■□□□ 1.52
TRIM43BA6NCK2 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC24.52■■□□□ 1.52
TRIM43BA6NCK2 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TRIM43BA6NCK2 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRIM43BA6NCK2 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.52■■□□□ 1.52
TRIM43BA6NCK2 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM43BA6NCK2 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM43BA6NCK2 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
TRIM43BA6NCK2 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM43BA6NCK2 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC24.51■■□□□ 1.51
TRIM43BA6NCK2 TSPY20P-201ENST00000450910 630 ntBASIC24.51■■□□□ 1.51
TRIM43BA6NCK2 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 MIR663A-201ENST00000385250 93 ntBASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 DUX4L4-201ENST00000566884 1269 ntBASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
TRIM43BA6NCK2 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 GPX1P1-201ENST00000388829 606 ntBASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 AC011767.1-201ENST00000617410 1153 ntBASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 STX4-202ENST00000394998 1498 ntTSL 2 BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM43BA6NCK2 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
TRIM43BA6NCK2 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
TRIM43BA6NCK2 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TRIM43BA6NCK2 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.48■■□□□ 1.51
TRIM43BA6NCK2 METTL26-203ENST00000397664 604 ntTSL 2 BASIC24.48■■□□□ 1.51
TRIM43BA6NCK2 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
TRIM43BA6NCK2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.48■■□□□ 1.51
TRIM43BA6NCK2 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC24.48■■□□□ 1.51
TRIM43BA6NCK2 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
TRIM43BA6NCK2 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
TRIM43BA6NCK2 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.47■■□□□ 1.51
TRIM43BA6NCK2 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC24.47■■□□□ 1.51
TRIM43BA6NCK2 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TRIM43BA6NCK2 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TRIM43BA6NCK2 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC24.47■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms