Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV1-1A0A0B4J248 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
TRAV1-1A0A0B4J248 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC17.39■□□□□ 0.38
TRAV1-1A0A0B4J248 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
TRAV1-1A0A0B4J248 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAV1-1A0A0B4J248 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 AL162393.1-201ENST00000437852 946 ntBASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 AC244015.2-201ENST00000616358 1861 ntBASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TRAV1-1A0A0B4J248 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 MOB2-207ENST00000614710 705 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 HGH1-207ENST00000628266 258 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-1A0A0B4J248 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-1A0A0B4J248 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-1A0A0B4J248 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms