Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 AL627231.1-201ENST00000394467 1125 ntBASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 AL157407.1-201ENST00000435784 904 ntBASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 CHMP1AP1-201ENST00000445563 662 ntBASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 AL118516.1-201ENST00000564152 670 ntBASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 CCT8L1P-201ENST00000465400 1674 ntBASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 PLEKHM1P1-205ENST00000582986 5014 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 GFRA1-203ENST00000369236 9109 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 UGGT2-203ENST00000376747 4832 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 PPP4R3B-206ENST00000616407 4385 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AL118506.1-201ENST00000601296 3082 ntBASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 EML1-203ENST00000334192 4064 ntTSL 5 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 GATAD2A-201ENST00000358713 5510 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AL590824.1-201ENST00000403828 1349 ntBASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AL008718.2-201ENST00000609206 1313 ntBASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AK6-201ENST00000380818 1183 ntTSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 BRI3P1-201ENST00000440440 378 ntBASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AC242376.2-201ENST00000619355 883 ntBASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AC022748.3-201ENST00000621828 275 ntBASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 TLK1-205ENST00000431350 5663 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 RNGTT-202ENST00000369485 4553 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 RNF111-201ENST00000348370 5913 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 FAM237B-201ENST00000637645 3877 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 HECW2-202ENST00000409111 6692 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC11.44□□□□□ -0.58
PDLIM3Q53GG5 TBC1D3J-201ENST00000620719 1426 ntBASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 AC108024.1-201ENST00000626286 1721 ntBASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 PNPLA7-202ENST00000406427 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms