Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC16.04■□□□□ 0.16
HMGB1P09429 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
HMGB1P09429 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC16.04■□□□□ 0.16
HMGB1P09429 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC16.04■□□□□ 0.16
HMGB1P09429 ITGB1BP1-201ENST00000238091 1772 ntTSL 3 BASIC16.04■□□□□ 0.16
HMGB1P09429 COL6A4P2-202ENST00000504443 2753 ntBASIC16.04■□□□□ 0.16
HMGB1P09429 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 IP6K2-210ENST00000431721 2174 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB1P09429 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB1P09429 CA6-205ENST00000480186 1493 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB1P09429 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB1P09429 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGB1P09429 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
HMGB1P09429 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB1P09429 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB1P09429 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HMGB1P09429 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
HMGB1P09429 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGB1P09429 OR7E115P-201ENST00000382617 1024 ntBASIC16.03■□□□□ 0.16
HMGB1P09429 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 HNRNPA1P33-201ENST00000421426 561 ntBASIC16.03■□□□□ 0.16
HMGB1P09429 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC16.03■□□□□ 0.16
HMGB1P09429 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 GULOP-201ENST00000454030 748 ntBASIC16.03■□□□□ 0.16
HMGB1P09429 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGB1P09429 RNA5SP406-201ENST00000516106 112 ntBASIC16.03■□□□□ 0.16
HMGB1P09429 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HMGB1P09429 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB1P09429 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
HMGB1P09429 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGB1P09429 MVP-202ENST00000395353 2925 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HMGB1P09429 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB1P09429 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC16.03■□□□□ 0.16
HMGB1P09429 PCDHB18P-202ENST00000526308 3197 ntBASIC16.03■□□□□ 0.16
HMGB1P09429 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HMGB1P09429 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HMGB1P09429 TRNAU1AP-201ENST00000373830 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB1P09429 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC16.02■□□□□ 0.16
HMGB1P09429 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 SLC23A1-202ENST00000353963 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
HMGB1P09429 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
HMGB1P09429 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
HMGB1P09429 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC16.02■□□□□ 0.16
HMGB1P09429 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
HMGB1P09429 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
HMGB1P09429 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB1P09429 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC16.02■□□□□ 0.16
HMGB1P09429 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC16.02■□□□□ 0.16
HMGB1P09429 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC16.02■□□□□ 0.16
HMGB1P09429 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB1P09429 AL354861.1-201ENST00000445213 355 ntBASIC16.02■□□□□ 0.16
HMGB1P09429 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.02■□□□□ 0.16
HMGB1P09429 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC16.02■□□□□ 0.16
HMGB1P09429 AC022201.1-201ENST00000452525 577 ntTSL 4 BASIC16.02■□□□□ 0.16
HMGB1P09429 NEU3-207ENST00000534628 746 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB1P09429 VENTXP3-201ENST00000546480 773 ntBASIC16.02■□□□□ 0.16
HMGB1P09429 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
HMGB1P09429 DNM1P51-201ENST00000558149 522 ntBASIC16.02■□□□□ 0.16
HMGB1P09429 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC16.02■□□□□ 0.16
HMGB1P09429 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC16.02■□□□□ 0.16
HMGB1P09429 NUDT4P2-201ENST00000578341 546 ntBASIC16.02■□□□□ 0.16
HMGB1P09429 RN7SL357P-201ENST00000581065 298 ntBASIC16.02■□□□□ 0.16
HMGB1P09429 RN7SL556P-201ENST00000582856 298 ntBASIC16.02■□□□□ 0.16
HMGB1P09429 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
HMGB1P09429 AC106872.11-201ENST00000605838 421 ntBASIC16.02■□□□□ 0.16
HMGB1P09429 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms