Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC008723.1-201ENST00000506922 207 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 AL137779.3-201ENST00000553295 729 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 STUB1-204ENST00000564370 875 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA1P55317 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC13.17□□□□□ -0.3
FOXA1P55317 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.17□□□□□ -0.3
FOXA1P55317 AC243960.2-201ENST00000600996 747 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 AC091769.1-201ENST00000619576 568 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 TRIM80P-201ENST00000455685 2848 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC13.17□□□□□ -0.3
FOXA1P55317 TMEM25-208ENST00000524725 2630 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA1P55317 AC092028.1-202ENST00000641483 3547 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 AC092028.1-201ENST00000641781 3540 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 ODCP-201ENST00000459650 1639 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 RAB6A-201ENST00000310653 3389 ntAPPRIS P5 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 TTN-AS1-209ENST00000456053 2033 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
FOXA1P55317 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA1P55317 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 TBC1D3F-201ENST00000620210 2117 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
FOXA1P55317 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA1P55317 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
FOXA1P55317 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
FOXA1P55317 PTN-202ENST00000393083 1599 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA1P55317 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 BEST1-208ENST00000534553 1829 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA1P55317 MPHOSPH10-201ENST00000244230 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
FOXA1P55317 HMGB1-202ENST00000339872 2319 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
FOXA1P55317 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
FOXA1P55317 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
FOXA1P55317 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13.16□□□□□ -0.3
FOXA1P55317 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA1P55317 FNTAP2-201ENST00000430308 634 ntBASIC13.16□□□□□ -0.3
FOXA1P55317 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA1P55317 STK24P1-201ENST00000455035 1291 ntBASIC13.16□□□□□ -0.3
FOXA1P55317 SCARNA12-201ENST00000459155 270 ntBASIC13.16□□□□□ -0.3
FOXA1P55317 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA1P55317 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA1P55317 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA1P55317 MIR4538-201ENST00000581377 78 ntBASIC13.16□□□□□ -0.3
FOXA1P55317 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA1P55317 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA1P55317 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.16□□□□□ -0.3
FOXA1P55317 AC007326.1-201ENST00000604539 458 ntBASIC13.16□□□□□ -0.3
FOXA1P55317 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA1P55317 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 HLA-DQB1-202ENST00000399079 1501 ntBASIC13.16□□□□□ -0.3
FOXA1P55317 FBXO5-201ENST00000229758 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
FOXA1P55317 CBR4-202ENST00000504480 1602 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA1P55317 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 HACD3-201ENST00000261875 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 AC099786.2-201ENST00000427892 2203 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA1P55317 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
FOXA1P55317 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 WDR66-202ENST00000397454 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA1P55317 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 TEKT4P2-202ENST00000559466 1312 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 DDC-201ENST00000357936 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 LIN28B-203ENST00000637759 2635 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA1P55317 ATG7-213ENST00000446450 2042 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA1P55317 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
FOXA1P55317 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 DDX12P-201ENST00000432996 2947 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
FOXA1P55317 YWHAB-201ENST00000353703 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 PYGL-206ENST00000544180 2696 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA1P55317 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 SERPINA1-205ENST00000404814 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms