Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC13.43□□□□□ -0.26
PCNAP12004 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
PCNAP12004 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PCNAP12004 VENTXP1-201ENST00000569334 2716 ntBASIC13.43□□□□□ -0.26
PCNAP12004 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PCNAP12004 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC13.43□□□□□ -0.26
PCNAP12004 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC13.43□□□□□ -0.26
PCNAP12004 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC13.43□□□□□ -0.26
PCNAP12004 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
PCNAP12004 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
PCNAP12004 AC008132.1-202ENST00000342005 1389 ntBASIC13.43□□□□□ -0.26
PCNAP12004 AC020907.1-201ENST00000616460 1350 ntBASIC13.43□□□□□ -0.26
PCNAP12004 SLC44A3-AS1-215ENST00000634870 5956 ntTSL 5 BASIC13.43□□□□□ -0.26
PCNAP12004 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC13.43□□□□□ -0.26
PCNAP12004 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
PCNAP12004 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
PCNAP12004 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
PCNAP12004 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
PCNAP12004 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 AC011481.3-201ENST00000623895 5594 ntBASIC13.42□□□□□ -0.26
PCNAP12004 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 AP003969.2-201ENST00000623739 2275 ntBASIC13.42□□□□□ -0.26
PCNAP12004 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
PCNAP12004 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC13.42□□□□□ -0.26
PCNAP12004 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
PCNAP12004 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC13.42□□□□□ -0.26
PCNAP12004 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC13.42□□□□□ -0.26
PCNAP12004 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
PCNAP12004 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
PCNAP12004 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 MIR645-201ENST00000385283 94 ntBASIC13.42□□□□□ -0.26
PCNAP12004 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
PCNAP12004 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.42□□□□□ -0.26
PCNAP12004 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC13.42□□□□□ -0.26
PCNAP12004 AC012618.1-201ENST00000461223 412 ntBASIC13.42□□□□□ -0.26
PCNAP12004 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.42□□□□□ -0.26
PCNAP12004 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC13.42□□□□□ -0.26
PCNAP12004 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.42□□□□□ -0.26
PCNAP12004 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.42□□□□□ -0.26
PCNAP12004 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.42□□□□□ -0.26
PCNAP12004 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
PCNAP12004 MIR4525-201ENST00000580000 75 ntBASIC13.42□□□□□ -0.26
PCNAP12004 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.42□□□□□ -0.26
PCNAP12004 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.42□□□□□ -0.26
PCNAP12004 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
PCNAP12004 AC244093.1-201ENST00000610837 814 ntBASIC13.42□□□□□ -0.26
PCNAP12004 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
PCNAP12004 DLX4-206ENST00000611342 1662 ntBASIC13.42□□□□□ -0.26
PCNAP12004 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC13.42□□□□□ -0.26
PCNAP12004 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC13.42□□□□□ -0.26
PCNAP12004 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
PCNAP12004 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PCNAP12004 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 TBC1D27-202ENST00000424239 1573 ntBASIC13.41□□□□□ -0.26
PCNAP12004 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
PCNAP12004 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC13.41□□□□□ -0.26
PCNAP12004 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
PCNAP12004 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
PCNAP12004 DNM1P41-201ENST00000623634 3350 ntBASIC13.41□□□□□ -0.26
PCNAP12004 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PCNAP12004 ZNF493-208ENST00000599461 1769 ntBASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms