Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.13■□□□□ 0.17
HMGB1P09429 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.13■□□□□ 0.17
HMGB1P09429 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC16.13■□□□□ 0.17
HMGB1P09429 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB1P09429 AC087392.5-201ENST00000612517 489 ntBASIC16.13■□□□□ 0.17
HMGB1P09429 MIR8071-1-201ENST00000616769 65 ntBASIC16.13■□□□□ 0.17
HMGB1P09429 MIR8071-2-201ENST00000616772 65 ntBASIC16.13■□□□□ 0.17
HMGB1P09429 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB1P09429 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB1P09429 GUCY2EP-203ENST00000531117 1918 ntBASIC16.13■□□□□ 0.17
HMGB1P09429 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 BEND3P3-201ENST00000611030 2440 ntBASIC16.13■□□□□ 0.17
HMGB1P09429 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGB1P09429 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB1P09429 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HMGB1P09429 LINC00567-201ENST00000569854 3409 ntBASIC16.12■□□□□ 0.17
HMGB1P09429 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB1P09429 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HMGB1P09429 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HMGB1P09429 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 AC026316.1-201ENST00000398900 414 ntBASIC16.12■□□□□ 0.17
HMGB1P09429 AC041040.1-201ENST00000425197 460 ntBASIC16.12■□□□□ 0.17
HMGB1P09429 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGB1P09429 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGB1P09429 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGB1P09429 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
HMGB1P09429 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGB1P09429 CD44-224ENST00000526669 870 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB1P09429 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 AP000322.3-201ENST00000608665 388 ntBASIC16.12■□□□□ 0.17
HMGB1P09429 AC084781.1-201ENST00000613737 656 ntBASIC16.12■□□□□ 0.17
HMGB1P09429 AC103691.2-201ENST00000618824 433 ntBASIC16.12■□□□□ 0.17
HMGB1P09429 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGB1P09429 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 DRD3-201ENST00000295881 1541 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HMGB1P09429 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB1P09429 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
HMGB1P09429 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 CCBE1-202ENST00000439986 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HMGB1P09429 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 AC005154.3-201ENST00000419639 1393 ntBASIC16.12■□□□□ 0.17
HMGB1P09429 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB1P09429 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
HMGB1P09429 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB1P09429 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGB1P09429 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 OSTM1-AS1-202ENST00000441184 3334 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC16.11■□□□□ 0.17
HMGB1P09429 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGB1P09429 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB1P09429 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB1P09429 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB1P09429 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGB1P09429 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HMGB1P09429 ABCD1P4-201ENST00000399687 604 ntBASIC16.11■□□□□ 0.17
HMGB1P09429 BCYRN1-201ENST00000418539 200 ntBASIC16.11■□□□□ 0.17
HMGB1P09429 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGB1P09429 CSNK1G2P1-201ENST00000442675 955 ntBASIC16.11■□□□□ 0.17
HMGB1P09429 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 IGHV1-12-201ENST00000518307 205 ntBASIC16.11■□□□□ 0.17
HMGB1P09429 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGB1P09429 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB1P09429 AC138894.2-201ENST00000602838 371 ntBASIC16.11■□□□□ 0.17
HMGB1P09429 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGB1P09429 AL021578.1-201ENST00000613646 709 ntBASIC16.11■□□□□ 0.17
HMGB1P09429 LINC00244-201ENST00000625073 613 ntBASIC16.11■□□□□ 0.17
HMGB1P09429 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 AGGF1P10-201ENST00000635005 2191 ntBASIC16.11■□□□□ 0.17
HMGB1P09429 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB1P09429 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms