Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RPS16-201ENST00000251453 560 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 PLA2G1B-201ENST00000308366 565 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 PLP2-201ENST00000376322 620 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A3P12111 IFT22-204ENST00000437644 875 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 CHCHD4P4-201ENST00000437690 327 ntBASIC13.54□□□□□ -0.24
COL6A3P12111 ZNF816-205ENST00000438970 491 ntTSL 4 BASIC13.54□□□□□ -0.24
COL6A3P12111 AL132709.1-202ENST00000448840 588 ntTSL 3 BASIC13.54□□□□□ -0.24
COL6A3P12111 EHF-209ENST00000531728 485 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A3P12111 AC113208.2-201ENST00000565381 608 ntBASIC13.54□□□□□ -0.24
COL6A3P12111 AL133299.1-201ENST00000565968 507 ntTSL 3 BASIC13.54□□□□□ -0.24
COL6A3P12111 RN7SL217P-201ENST00000584520 286 ntBASIC13.54□□□□□ -0.24
COL6A3P12111 ZNF761-204ENST00000610928 938 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 KRT40-202ENST00000398486 1772 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 NAP1L1-206ENST00000544816 1597 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A3P12111 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 TOP1MT-213ENST00000521193 1960 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A3P12111 AL157996.1-201ENST00000624684 2299 ntBASIC13.54□□□□□ -0.24
COL6A3P12111 MPHOSPH6-201ENST00000258169 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 SETD4-202ENST00000399201 1212 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 SETD4-203ENST00000399205 1208 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 CD27-AS1-201ENST00000399492 1094 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 AL355001.1-201ENST00000422148 444 ntTSL 5 BASIC13.54□□□□□ -0.24
COL6A3P12111 CDK2AP2P2-201ENST00000478512 367 ntBASIC13.54□□□□□ -0.24
COL6A3P12111 RN7SL211P-201ENST00000485246 276 ntBASIC13.54□□□□□ -0.24
COL6A3P12111 IFITM9P-201ENST00000535743 396 ntBASIC13.54□□□□□ -0.24
COL6A3P12111 AL391152.1-201ENST00000554160 1111 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A3P12111 NAA38-204ENST00000575208 529 ntTSL 3 BASIC13.54□□□□□ -0.24
COL6A3P12111 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A3P12111 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.54□□□□□ -0.24
COL6A3P12111 AC100803.1-201ENST00000501440 1380 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A3P12111 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
COL6A3P12111 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 CREB5-204ENST00000396300 2319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 LINC02054-201ENST00000419960 885 ntTSL 3 BASIC13.53□□□□□ -0.24
COL6A3P12111 TMEM256P2-201ENST00000440241 341 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A3P12111 IL2RG-204ENST00000456850 540 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 DTNBP1-204ENST00000462989 1010 ntTSL 3 BASIC13.53□□□□□ -0.24
COL6A3P12111 RPL14P3-201ENST00000476715 622 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 AC004803.1-202ENST00000545629 569 ntTSL 3 BASIC13.53□□□□□ -0.24
COL6A3P12111 LINC02253-202ENST00000560314 565 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A3P12111 MIR4763-201ENST00000581461 92 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 AC087893.1-201ENST00000612818 664 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 GGNBP1-206ENST00000618642 897 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 AC004951.1-201ENST00000447643 1866 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 SC5D-208ENST00000534230 1861 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A3P12111 GPHA2-201ENST00000279168 747 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 OGFRP1-201ENST00000332965 1242 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 KLK13-202ENST00000335422 378 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 MIR1273A-201ENST00000408826 103 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 LINC01874-201ENST00000427398 510 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 RN7SL40P-201ENST00000474689 342 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 AP001972.4-201ENST00000530550 560 ntTSL 4 BASIC13.53□□□□□ -0.24
COL6A3P12111 GPHA2-203ENST00000533257 582 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 MIR3940-201ENST00000579148 102 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 KLK13-205ENST00000595547 615 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 KLK13-206ENST00000595793 927 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 AC027348.1-201ENST00000615979 615 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A3P12111 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 MPI-208ENST00000563786 1707 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A3P12111 CNTNAP2-207ENST00000628930 1944 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 STAU2-202ENST00000517542 1695 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 AC018445.4-201ENST00000624066 2291 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC13.53□□□□□ -0.24
COL6A3P12111 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
COL6A3P12111 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 OR52I2-201ENST00000312614 1115 ntAPPRIS P2 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms