Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 LINP1-201ENST00000417112 917 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 FAM86KP-201ENST00000509817 987 ntBASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CCDC3Q9BQI4 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 AL928921.2-201ENST00000641325 2442 ntBASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 RN7SL351P-201ENST00000469306 248 ntBASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 RPS5-204ENST00000598098 536 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 AL136982.5-201ENST00000605222 294 ntBASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 FKBP4P8-201ENST00000610931 1369 ntBASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 GRK6P1-201ENST00000400595 1711 ntBASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 PES1P2-201ENST00000449745 1735 ntBASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC3Q9BQI4 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC3Q9BQI4 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms