Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC13.98□□□□□ -0.17
USP39Q53GS9 AL627230.2-201ENST00000613254 655 ntBASIC13.98□□□□□ -0.17
USP39Q53GS9 AC073869.4-201ENST00000620841 800 ntBASIC13.98□□□□□ -0.17
USP39Q53GS9 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
USP39Q53GS9 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USP39Q53GS9 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USP39Q53GS9 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC13.98□□□□□ -0.17
USP39Q53GS9 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
USP39Q53GS9 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USP39Q53GS9 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.98□□□□□ -0.17
USP39Q53GS9 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
USP39Q53GS9 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.98□□□□□ -0.17
USP39Q53GS9 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC13.98□□□□□ -0.17
USP39Q53GS9 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USP39Q53GS9 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USP39Q53GS9 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.98□□□□□ -0.17
USP39Q53GS9 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USP39Q53GS9 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USP39Q53GS9 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.98□□□□□ -0.17
USP39Q53GS9 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.98□□□□□ -0.17
USP39Q53GS9 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
USP39Q53GS9 AC105206.1-202ENST00000314927 2368 ntBASIC13.97□□□□□ -0.17
USP39Q53GS9 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
USP39Q53GS9 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.97□□□□□ -0.17
USP39Q53GS9 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.97□□□□□ -0.17
USP39Q53GS9 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
USP39Q53GS9 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
USP39Q53GS9 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
USP39Q53GS9 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
USP39Q53GS9 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
USP39Q53GS9 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.97□□□□□ -0.17
USP39Q53GS9 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC13.97□□□□□ -0.17
USP39Q53GS9 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC13.97□□□□□ -0.17
USP39Q53GS9 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC13.97□□□□□ -0.17
USP39Q53GS9 AC092903.1-201ENST00000466506 262 ntBASIC13.97□□□□□ -0.17
USP39Q53GS9 RN7SL128P-201ENST00000467883 305 ntBASIC13.97□□□□□ -0.17
USP39Q53GS9 RN7SL351P-201ENST00000469306 248 ntBASIC13.97□□□□□ -0.17
USP39Q53GS9 RN7SL147P-201ENST00000487345 298 ntBASIC13.97□□□□□ -0.17
USP39Q53GS9 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC13.97□□□□□ -0.17
USP39Q53GS9 AC027139.1-201ENST00000565286 951 ntBASIC13.97□□□□□ -0.17
USP39Q53GS9 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC13.97□□□□□ -0.17
USP39Q53GS9 AL136982.5-201ENST00000605222 294 ntBASIC13.97□□□□□ -0.17
USP39Q53GS9 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC13.97□□□□□ -0.17
USP39Q53GS9 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
USP39Q53GS9 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 AC117503.4-201ENST00000623229 1418 ntBASIC13.97□□□□□ -0.17
USP39Q53GS9 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.97□□□□□ -0.17
USP39Q53GS9 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
USP39Q53GS9 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
USP39Q53GS9 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 GOLGA8UP-201ENST00000527159 1755 ntBASIC13.96□□□□□ -0.17
USP39Q53GS9 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
USP39Q53GS9 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.96□□□□□ -0.17
USP39Q53GS9 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.96□□□□□ -0.17
USP39Q53GS9 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
USP39Q53GS9 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
USP39Q53GS9 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
USP39Q53GS9 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
USP39Q53GS9 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 MIR1307-201ENST00000408840 149 ntBASIC13.96□□□□□ -0.17
USP39Q53GS9 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC13.96□□□□□ -0.17
USP39Q53GS9 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC13.96□□□□□ -0.17
USP39Q53GS9 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC13.96□□□□□ -0.17
USP39Q53GS9 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
USP39Q53GS9 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC13.96□□□□□ -0.17
USP39Q53GS9 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.96□□□□□ -0.17
USP39Q53GS9 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC13.96□□□□□ -0.17
USP39Q53GS9 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC13.96□□□□□ -0.17
USP39Q53GS9 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC13.96□□□□□ -0.17
USP39Q53GS9 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms