Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.47■□□□□ 0.07
TPM4P67936 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.47■□□□□ 0.07
TPM4P67936 AC027307.3-201ENST00000594262 1100 ntBASIC15.47■□□□□ 0.07
TPM4P67936 AC008687.7-203ENST00000598442 551 ntTSL 4 BASIC15.47■□□□□ 0.07
TPM4P67936 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
TPM4P67936 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.47■□□□□ 0.07
TPM4P67936 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 AC092299.1-201ENST00000632679 757 ntBASIC15.47■□□□□ 0.07
TPM4P67936 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.47■□□□□ 0.07
TPM4P67936 NRAP-201ENST00000359988 5580 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 PARP10-203ENST00000524918 3469 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
TPM4P67936 GABRR2-201ENST00000402938 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 PLEKHM1P1-205ENST00000582986 5014 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 SLC25A24-203ENST00000565488 4271 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
TPM4P67936 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 C15orf40-201ENST00000304177 11244 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 PAPLN-203ENST00000554301 4090 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
TPM4P67936 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
TPM4P67936 CICP9-201ENST00000444451 1913 ntBASIC15.47■□□□□ 0.07
TPM4P67936 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC15.47■□□□□ 0.07
TPM4P67936 PCDHGA9-201ENST00000573521 4605 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM4P67936 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC15.47■□□□□ 0.07
TPM4P67936 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.07
TPM4P67936 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC15.46■□□□□ 0.07
TPM4P67936 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 CLCN4-203ENST00000421085 6534 ntTSL 5 BASIC15.46■□□□□ 0.07
TPM4P67936 UMODL1-205ENST00000408910 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
TPM4P67936 TMEM94-201ENST00000314256 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
TPM4P67936 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.46■□□□□ 0.07
TPM4P67936 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.46■□□□□ 0.07
TPM4P67936 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.46■□□□□ 0.07
TPM4P67936 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.46■□□□□ 0.07
TPM4P67936 BCRP1-201ENST00000444246 691 ntBASIC15.46■□□□□ 0.07
TPM4P67936 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC15.46■□□□□ 0.07
TPM4P67936 CRB3P1-201ENST00000449338 276 ntBASIC15.46■□□□□ 0.07
TPM4P67936 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC15.46■□□□□ 0.07
TPM4P67936 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
TPM4P67936 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.46■□□□□ 0.07
TPM4P67936 MIR4783-201ENST00000580343 82 ntBASIC15.46■□□□□ 0.07
TPM4P67936 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.07
TPM4P67936 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 TNFSF8-201ENST00000223795 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 CHL1-201ENST00000256509 8023 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 TRIM80P-201ENST00000455685 2848 ntBASIC15.46■□□□□ 0.07
TPM4P67936 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM4P67936 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.46■□□□□ 0.07
TPM4P67936 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC15.46■□□□□ 0.07
TPM4P67936 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC15.46■□□□□ 0.07
TPM4P67936 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TPM4P67936 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
TPM4P67936 PLB1-201ENST00000327757 5107 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
TPM4P67936 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TPM4P67936 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TPM4P67936 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TPM4P67936 OTOF-203ENST00000339598 4756 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 KDM2A-210ENST00000529006 6967 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC15.45■□□□□ 0.06
TPM4P67936 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.45■□□□□ 0.06
TPM4P67936 CAST-206ENST00000395812 4506 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TPM4P67936 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 ARHGAP33-203ENST00000314737 3858 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
TPM4P67936 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 PTCH1-207ENST00000429896 6563 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
TPM4P67936 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TPM4P67936 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC15.45■□□□□ 0.06
TPM4P67936 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.45■□□□□ 0.06
TPM4P67936 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.45■□□□□ 0.06
TPM4P67936 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
TPM4P67936 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.45■□□□□ 0.06
TPM4P67936 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM4P67936 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.45■□□□□ 0.06
TPM4P67936 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms