Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC12.39□□□□□ -0.43
SUMO3P55854 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC12.39□□□□□ -0.43
SUMO3P55854 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC12.39□□□□□ -0.43
SUMO3P55854 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC12.39□□□□□ -0.43
SUMO3P55854 AC103563.1-201ENST00000429316 123 ntBASIC12.39□□□□□ -0.43
SUMO3P55854 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC12.39□□□□□ -0.43
SUMO3P55854 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC12.39□□□□□ -0.43
SUMO3P55854 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC12.39□□□□□ -0.43
SUMO3P55854 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC12.39□□□□□ -0.43
SUMO3P55854 NT5C-204ENST00000578337 582 ntTSL 2 BASIC12.39□□□□□ -0.43
SUMO3P55854 DBP-202ENST00000593500 712 ntTSL 2 BASIC12.39□□□□□ -0.43
SUMO3P55854 AC016629.1-201ENST00000596579 586 ntBASIC12.39□□□□□ -0.43
SUMO3P55854 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC12.39□□□□□ -0.43
SUMO3P55854 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.39□□□□□ -0.43
SUMO3P55854 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
SUMO3P55854 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 CICP9-201ENST00000444451 1913 ntBASIC12.39□□□□□ -0.43
SUMO3P55854 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
SUMO3P55854 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
SUMO3P55854 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC12.38□□□□□ -0.43
SUMO3P55854 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.38□□□□□ -0.43
SUMO3P55854 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC12.38□□□□□ -0.43
SUMO3P55854 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
SUMO3P55854 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 CR383656.3-201ENST00000551315 183 ntBASIC12.38□□□□□ -0.43
SUMO3P55854 MT3-202ENST00000561640 514 ntTSL 3 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC12.38□□□□□ -0.43
SUMO3P55854 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 AC005777.1-201ENST00000588332 187 ntBASIC12.38□□□□□ -0.43
SUMO3P55854 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC005041.3-201ENST00000606287 649 ntBASIC12.38□□□□□ -0.43
SUMO3P55854 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC12.38□□□□□ -0.43
SUMO3P55854 HELLS-212ENST00000630929 400 ntTSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SUMO3P55854 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
SUMO3P55854 AC005014.1-201ENST00000432006 2976 ntBASIC12.38□□□□□ -0.43
SUMO3P55854 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC12.38□□□□□ -0.43
SUMO3P55854 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms