Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 RPS6KA1-220ENST00000531382 2359 ntTSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 STAT6-203ENST00000537215 2886 ntTSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 AMACR-201ENST00000335606 4153 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 CLK3-201ENST00000345005 1846 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 RABGAP1L-207ENST00000367690 1815 ntTSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 MMP19-206ENST00000548629 1813 ntTSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 HHIPL2-201ENST00000343410 2575 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC10.66□□□□□ -0.7
CXCL1P09341 NSL1-201ENST00000366976 722 ntTSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 GAS5-209ENST00000430245 723 ntTSL 3 BASIC10.66□□□□□ -0.7
CXCL1P09341 MYCLP2-201ENST00000449268 967 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 AL035414.1-201ENST00000451327 857 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 AC011495.1-201ENST00000498085 584 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC10.66□□□□□ -0.7
CXCL1P09341 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC10.66□□□□□ -0.7
CXCL1P09341 AL359711.2-201ENST00000563105 872 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 RN7SL48P-201ENST00000579283 293 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 AC133539.2-201ENST00000604757 467 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
CXCL1P09341 AC005252.2-201ENST00000624630 1141 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 AC079781.4-201ENST00000641908 219 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 CHST15-202ENST00000435907 4820 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 AC008040.5-201ENST00000599781 1781 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 Z98885.3-201ENST00000624882 1757 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 SLC18A1-201ENST00000265808 2770 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 RNF4-222ENST00000541204 2796 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 AC098650.1-201ENST00000635992 3535 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 HSPA12A-201ENST00000369209 5722 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 DIAPH2-203ENST00000373049 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 ACSL6-207ENST00000379264 6539 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 AOC1-207ENST00000493429 3135 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 AL713866.1-201ENST00000563320 3125 ntBASIC10.66□□□□□ -0.7
CXCL1P09341 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 AC022098.1-201ENST00000588387 2861 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 CHCHD7-201ENST00000303759 1684 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC10.66□□□□□ -0.7
CXCL1P09341 LIN28B-203ENST00000637759 2635 ntTSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 TRIM46-201ENST00000334634 3061 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 PIK3R5-202ENST00000447110 4495 ntAPPRIS P2 TSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 SORBS2-203ENST00000319471 2824 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 PECR-201ENST00000265322 1853 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 SMARCAL1-201ENST00000357276 3271 ntAPPRIS P2 TSL 2 BASIC10.66□□□□□ -0.7
CXCL1P09341 PCDHGA7-202ENST00000617050 3262 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
CXCL1P09341 FBLN1-203ENST00000340923 2348 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 ERP44-201ENST00000262455 4854 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 ZNF740-201ENST00000416904 8578 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 ADGRE5-203ENST00000358600 2751 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 VSTM4-202ENST00000332853 6392 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 IFT22-211ENST00000621899 2272 ntTSL 2 BASIC10.65□□□□□ -0.7
CXCL1P09341 TOMM40L-202ENST00000367988 2708 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
CXCL1P09341 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
CXCL1P09341 CEP83-201ENST00000339839 3130 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC10.65□□□□□ -0.7
CXCL1P09341 ELN-201ENST00000252034 3781 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC10.65□□□□□ -0.7
CXCL1P09341 SLC35F1-201ENST00000360388 4852 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 FKBP4P6-201ENST00000457486 1332 ntBASIC10.65□□□□□ -0.7
CXCL1P09341 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 AC012676.5-201ENST00000624337 1955 ntBASIC10.65□□□□□ -0.7
CXCL1P09341 CDC6-201ENST00000209728 4810 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 ANO1-207ENST00000530676 3289 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
CXCL1P09341 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC10.65□□□□□ -0.7
CXCL1P09341 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
CXCL1P09341 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC10.65□□□□□ -0.7
CXCL1P09341 C14orf159-203ENST00000412671 2591 ntAPPRIS ALT1 TSL 5 BASIC10.65□□□□□ -0.7
CXCL1P09341 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC10.65□□□□□ -0.7
CXCL1P09341 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
CXCL1P09341 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CXCL1P09341 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms